Literature DB >> 20566322

Expression, purification, and characterization of soluble K-Ras4B for structural analysis.

Sherwin J Abraham1, Ismaeel Muhamed, Ryan Nolet, Fung Yeung, Vadim Gaponenko.   

Abstract

A p21 GTPase K-Ras4B plays an important role in human cancer and represents an excellent target for cancer therapeutics. Currently, there are no drugs directly targeting K-Ras4B. In part, this is due to the lack of structural information describing unique features of K-Ras4B. Here we describe a methodology allowing production of soluble, well-folded K-Ras4B for structural analysis. The key points in K-Ras4B preparation are low temperature expression and extraction of K-Ras4B from the insoluble fraction using a nucleotide loading procedure in the presence of Mg(2+) and citrate, a low affinity chelator. Additionally, a significant amount of K-Ras4B could be extracted from the soluble fraction. We show that recombinant K-Ras4B is monomeric in solution. Excellent NMR signal dispersion suggests that the protein is well-folded and is amenable to solution structure determination. In addition, using phospholipid bilayer nanodiscs we show that recombinant K-Ras4B interacts with lipids and that this interaction is mediated by the C-terminal hypervariable region. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20566322     DOI: 10.1016/j.pep.2010.05.015

Source DB:  PubMed          Journal:  Protein Expr Purif        ISSN: 1046-5928            Impact factor:   1.650


  8 in total

1.  GTP-Dependent K-Ras Dimerization.

Authors:  Serena Muratcioglu; Tanmay S Chavan; Benjamin C Freed; Hyunbum Jang; Lyuba Khavrutskii; R Natasha Freed; Marzena A Dyba; Karen Stefanisko; Sergey G Tarasov; Attila Gursoy; Ozlem Keskin; Nadya I Tarasova; Vadim Gaponenko; Ruth Nussinov
Journal:  Structure       Date:  2015-06-04       Impact factor: 5.006

2.  Mechanisms of membrane binding of small GTPase K-Ras4B farnesylated hypervariable region.

Authors:  Hyunbum Jang; Sherwin J Abraham; Tanmay S Chavan; Ben Hitchinson; Lyuba Khavrutskii; Nadya I Tarasova; Ruth Nussinov; Vadim Gaponenko
Journal:  J Biol Chem       Date:  2015-02-24       Impact factor: 5.157

3.  Pan-KRAS inhibitors suppress proliferation through feedback regulation in pancreatic ductal adenocarcinoma.

Authors:  Cheng-Xiang Wang; Ting-Ting Wang; Kun-Dong Zhang; Ming-Yu Li; Qian-Cheng Shen; Shao-Yong Lu; Jian Zhang
Journal:  Acta Pharmacol Sin       Date:  2022-03-29       Impact factor: 7.169

4.  GTP Binding and Oncogenic Mutations May Attenuate Hypervariable Region (HVR)-Catalytic Domain Interactions in Small GTPase K-Ras4B, Exposing the Effector Binding Site.

Authors:  Shaoyong Lu; Avik Banerjee; Hyunbum Jang; Jian Zhang; Vadim Gaponenko; Ruth Nussinov
Journal:  J Biol Chem       Date:  2015-10-09       Impact factor: 5.157

5.  An Application of pET SUMO Protein Expression System in Escherichia coli: Cloning, Expression, Purification, and Characterisation of Native Kras4BG12V Oncoprotein.

Authors:  Michelle Siying Tan; Yuan Han Teh; Kok Lian Ho; Johnson Stanslas
Journal:  Protein J       Date:  2020-02       Impact factor: 2.371

6.  High-Affinity Interaction of the K-Ras4B Hypervariable Region with the Ras Active Site.

Authors:  Tanmay S Chavan; Hyunbum Jang; Lyuba Khavrutskii; Sherwin J Abraham; Avik Banerjee; Benjamin C Freed; Liv Johannessen; Sergey G Tarasov; Vadim Gaponenko; Ruth Nussinov; Nadya I Tarasova
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

7.  The bacterial Ras/Rap1 site-specific endopeptidase RRSP cleaves Ras through an atypical mechanism to disrupt Ras-ERK signaling.

Authors:  Marco Biancucci; George Minasov; Avik Banerjee; Alfa Herrera; Patrick J Woida; Matthew B Kieffer; Lakshman Bindu; Maria Abreu-Blanco; Wayne F Anderson; Vadim Gaponenko; Andrew G Stephen; Matthew Holderfield; Karla J F Satchell
Journal:  Sci Signal       Date:  2018-10-02       Impact factor: 9.517

8.  New ligation independent cloning vectors for expression of recombinant proteins with a self-cleaving CPD/6xHis-tag.

Authors:  Marco Biancucci; Jazel S Dolores; Jennifer Wong; Sarah Grimshaw; Wayne F Anderson; Karla J F Satchell; Keehwan Kwon
Journal:  BMC Biotechnol       Date:  2017-01-05       Impact factor: 3.329

  8 in total

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