Literature DB >> 20558750

Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria.

James B McKinlay1, Caroline S Harwood.   

Abstract

The Calvin-Benson-Bassham cycle (Calvin cycle) catalyzes virtually all primary productivity on Earth and is the major sink for atmospheric CO(2). A less appreciated function of CO(2) fixation is as an electron-accepting process. It is known that anoxygenic phototrophic bacteria require the Calvin cycle to accept electrons when growing with light as their sole energy source and organic substrates as their sole carbon source. However, it was unclear why and to what extent CO(2) fixation is required when the organic substrates are more oxidized than biomass. To address these questions we measured metabolic fluxes in the photosynthetic bacterium Rhodopseudomonas palustris grown with (13)C-labeled acetate. R. palustris metabolized 22% of acetate provided to CO(2) and then fixed 68% of this CO(2) into cell material using the Calvin cycle. This Calvin cycle flux enabled R. palustris to reoxidize nearly half of the reduced cofactors generated during conversion of acetate to biomass, revealing that CO(2) fixation plays a major role in cofactor recycling. When H(2) production via nitrogenase was used as an alternative cofactor recycling mechanism, a similar amount of CO(2) was released from acetate, but only 12% of it was reassimilated by the Calvin cycle. These results underscore that N(2) fixation and CO(2) fixation have electron-accepting roles separate from their better-known roles in ammonia production and biomass generation. Some nonphotosynthetic heterotrophic bacteria have Calvin cycle genes, and their potential to use CO(2) fixation to recycle reduced cofactors deserves closer scrutiny.

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Year:  2010        PMID: 20558750      PMCID: PMC2900684          DOI: 10.1073/pnas.1006175107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Redirection of metabolism for biological hydrogen production.

Authors:  Federico E Rey; Erin K Heiniger; Caroline S Harwood
Journal:  Appl Environ Microbiol       Date:  2007-01-12       Impact factor: 4.792

2.  Biomass production and studies on Rhodopseudomonas palustris grown in an outdoor, temperature controlled, underwater tubular photobioreactor.

Authors:  P Carlozzi; A Sacchi
Journal:  J Biotechnol       Date:  2001-07-12       Impact factor: 3.307

3.  Bidirectional reaction steps in metabolic networks: II. Flux estimation and statistical analysis.

Authors:  W Wiechert; C Siefke; A A de Graaf; A Marx
Journal:  Biotechnol Bioeng       Date:  1997-07-05       Impact factor: 4.530

4.  Determining Actinobacillus succinogenes metabolic pathways and fluxes by NMR and GC-MS analyses of 13C-labeled metabolic product isotopomers.

Authors:  James B McKinlay; Yair Shachar-Hill; J Gregory Zeikus; Claire Vieille
Journal:  Metab Eng       Date:  2006-11-17       Impact factor: 9.783

5.  Pyridine nucleotide control and subunit structure of phosphoribulokinase from photosynthetic bacteria.

Authors:  F R Tabita
Journal:  J Bacteriol       Date:  1980-09       Impact factor: 3.490

6.  Regulation of uptake hydrogenase and effects of hydrogen utilization on gene expression in Rhodopseudomonas palustris.

Authors:  Federico E Rey; Yasuhiro Oda; Caroline S Harwood
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

7.  Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1.

Authors:  Staci R Kane; Anu Y Chakicherla; Patrick S G Chain; Radomir Schmidt; Maria W Shin; Tina C Legler; Kate M Scow; Frank W Larimer; Susan M Lucas; Paul M Richardson; Krassimira R Hristova
Journal:  J Bacteriol       Date:  2006-12-08       Impact factor: 3.490

Review 8.  Regulators of nonsulfur purple phototrophic bacteria and the interactive control of CO2 assimilation, nitrogen fixation, hydrogen metabolism and energy generation.

Authors:  James M Dubbs; F Robert Tabita
Journal:  FEMS Microbiol Rev       Date:  2004-06       Impact factor: 16.408

9.  Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation.

Authors:  Kennan Kellaris Salinero; Keith Keller; William S Feil; Helene Feil; Stephan Trong; Genevieve Di Bartolo; Alla Lapidus
Journal:  BMC Genomics       Date:  2009-08-03       Impact factor: 3.969

10.  Expression of endogenous and foreign ribulose 1,5-bisphosphate carboxylase-oxygenase (RubisCO) genes in a RubisCO deletion mutant of Rhodobacter sphaeroides.

Authors:  D L Falcone; F R Tabita
Journal:  J Bacteriol       Date:  1991-03       Impact factor: 3.490

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  87 in total

1.  Physiological roles for two periplasmic nitrate reductases in Rhodobacter sphaeroides 2.4.3 (ATCC 17025).

Authors:  Angela Hartsock; James P Shapleigh
Journal:  J Bacteriol       Date:  2011-09-23       Impact factor: 3.490

2.  Antisense RNA that affects Rhodopseudomonas palustris quorum-sensing signal receptor expression.

Authors:  Hidetada Hirakawa; Caroline S Harwood; Kieran B Pechter; Amy L Schaefer; E Peter Greenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-09       Impact factor: 11.205

Review 3.  Carboxylases in natural and synthetic microbial pathways.

Authors:  Tobias J Erb
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

4.  Metabolic pathway confirmation and discovery through (13)C-labeling of proteinogenic amino acids.

Authors:  Le You; Lawrence Page; Xueyang Feng; Bert Berla; Himadri B Pakrasi; Yinjie J Tang
Journal:  J Vis Exp       Date:  2012-01-26       Impact factor: 1.355

5.  Apo-bacteriophytochromes modulate bacterial photosynthesis in response to low light.

Authors:  Kathryn R Fixen; Anna W Baker; Emina A Stojkovic; J Thomas Beatty; Caroline S Harwood
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-30       Impact factor: 11.205

6.  N2 gas is an effective fertilizer for bioethanol production by Zymomonas mobilis.

Authors:  Timothy A Kremer; Breah LaSarre; Amanda L Posto; James B McKinlay
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

7.  Genetic Plasticity and Ethylmalonyl Coenzyme A Pathway during Acetate Assimilation in Rhodospirillum rubrum S1H under Photoheterotrophic Conditions.

Authors:  Quentin De Meur; Adam Deutschbauer; Matthias Koch; Ruddy Wattiez; Baptiste Leroy
Journal:  Appl Environ Microbiol       Date:  2018-01-17       Impact factor: 4.792

8.  Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides.

Authors:  Wayne S Kontur; Eva C Ziegelhoffer; Melanie A Spero; Saheed Imam; Daniel R Noguera; Timothy J Donohue
Journal:  Appl Environ Microbiol       Date:  2011-08-19       Impact factor: 4.792

9.  High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.

Authors:  Manuel Martinez-Garcia; Brandon K Swan; Nicole J Poulton; Monica Lluesma Gomez; Dashiell Masland; Michael E Sieracki; Ramunas Stepanauskas
Journal:  ISME J       Date:  2011-06-30       Impact factor: 10.302

10.  Barriers to 3-Hydroxypropionate-Dependent Growth of Rhodobacter sphaeroides by Distinct Disruptions of the Ethylmalonyl Coenzyme A Pathway.

Authors:  Steven J Carlson; Angela Fleig; M Kelsey Baron; Ivan A Berg; Birgit E Alber
Journal:  J Bacteriol       Date:  2019-01-28       Impact factor: 3.490

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