Literature DB >> 20558629

Getting from genes to function in lung disease: a National Heart, Lung, and Blood Institute workshop report.

Carole Ober1, Atul J Butte, Jack A Elias, A Jake Lusis, Weiniu Gan, Susan Banks-Schlegel, David Schwartz.   

Abstract

Genome-wide association studies (GWAS) have revealed novel genes and pathways involved in lung disease, many of which are potential targets for therapy. However, despite numerous successes, a large proportion of the genetic variance in disease risk remains unexplained, and the function of the associated genetic variations identified by GWAS and the mechanisms by which they alter individual risk for disease or pathogenesis are still largely unknown. The National Heart, Lung, and Blood Institute (NHLBI) convened a 2-day workshop to address these shortcomings and to make recommendations for future research areas that will move the scientific community beyond gene discovery. Topics of individual sessions ranged from data integration and systems genetics to functional validation of genetic variations in humans and model systems. There was broad consensus among the participants for five high-priority areas for future research, including the following: (1) integrated approaches to characterize the function of genetic variations, (2) studies on the role of environment and mechanisms of transcriptional and post-transcriptional regulation, (3) development of model systems to study gene function in complex biological systems, (4) comparative phenomic studies across lung diseases, and (5) training in and applications of bioinformatic approaches for comprehensive mining of existing data sets. Last, it was agreed that future research on lung diseases should integrate approaches across "-omic" technologies and to include ethnically/racially diverse populations in human studies of lung disease whenever possible.

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Mesh:

Year:  2010        PMID: 20558629      PMCID: PMC2949401          DOI: 10.1164/rccm.201002-0180PP

Source DB:  PubMed          Journal:  Am J Respir Crit Care Med        ISSN: 1073-449X            Impact factor:   21.405


  16 in total

1.  Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.

Authors:  Daniel F Gudbjartsson; Unnur S Bjornsdottir; Eva Halapi; Anna Helgadottir; Patrick Sulem; Gudrun M Jonsdottir; Gudmar Thorleifsson; Hafdis Helgadottir; Valgerdur Steinthorsdottir; Hreinn Stefansson; Carolyn Williams; Jennie Hui; John Beilby; Nicole M Warrington; Alan James; Lyle J Palmer; Gerard H Koppelman; Andrea Heinzmann; Marcus Krueger; H Marike Boezen; Amanda Wheatley; Janine Altmuller; Hyoung Doo Shin; Soo-Taek Uh; Hyun Sub Cheong; Brynja Jonsdottir; David Gislason; Choon-Sik Park; Linda M Rasmussen; Celeste Porsbjerg; Jakob W Hansen; Vibeke Backer; Thomas Werge; Christer Janson; Ulla-Britt Jönsson; Maggie C Y Ng; Juliana Chan; Wing Yee So; Ronald Ma; Svati H Shah; Christopher B Granger; Arshed A Quyyumi; Allan I Levey; Viola Vaccarino; Muredach P Reilly; Daniel J Rader; Michael J A Williams; Andre M van Rij; Gregory T Jones; Elisabetta Trabetti; Giovanni Malerba; Pier Franco Pignatti; Attilio Boner; Lydia Pescollderungg; Domenico Girelli; Oliviero Olivieri; Nicola Martinelli; Bjorn R Ludviksson; Dora Ludviksdottir; Gudmundur I Eyjolfsson; David Arnar; Gudmundur Thorgeirsson; Klaus Deichmann; Philip J Thompson; Matthias Wjst; Ian P Hall; Dirkje S Postma; Thorarinn Gislason; Jeffrey Gulcher; Augustine Kong; Ingileif Jonsdottir; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nat Genet       Date:  2009-02-08       Impact factor: 38.330

2.  Common genetic variation and human traits.

Authors:  David B Goldstein
Journal:  N Engl J Med       Date:  2009-04-15       Impact factor: 91.245

3.  Genomewide association studies--illuminating biologic pathways.

Authors:  Joel N Hirschhorn
Journal:  N Engl J Med       Date:  2009-04-15       Impact factor: 91.245

4.  Genetic risk prediction--are we there yet?

Authors:  Peter Kraft; David J Hunter
Journal:  N Engl J Med       Date:  2009-04-15       Impact factor: 91.245

5.  Genome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions.

Authors:  Xingnan Li; Timothy D Howard; Siqun L Zheng; Tmirah Haselkorn; Stephen P Peters; Deborah A Meyers; Eugene R Bleecker
Journal:  J Allergy Clin Immunol       Date:  2010-02       Impact factor: 10.793

6.  Genome-wide association study identifies ANXA11 as a new susceptibility locus for sarcoidosis.

Authors:  Sylvia Hofmann; Andre Franke; Annegret Fischer; Gunnar Jacobs; Michael Nothnagel; Karoline I Gaede; Manfred Schürmann; Joachim Müller-Quernheim; Michael Krawczak; Philip Rosenstiel; Stefan Schreiber
Journal:  Nat Genet       Date:  2008-09       Impact factor: 38.330

7.  Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma.

Authors:  Miriam F Moffatt; Michael Kabesch; Liming Liang; Anna L Dixon; David Strachan; Simon Heath; Martin Depner; Andrea von Berg; Albrecht Bufe; Ernst Rietschel; Andrea Heinzmann; Burkard Simma; Thomas Frischer; Saffron A G Willis-Owen; Kenny C C Wong; Thomas Illig; Christian Vogelberg; Stephan K Weiland; Erika von Mutius; Gonçalo R Abecasis; Martin Farrall; Ivo G Gut; G Mark Lathrop; William O C Cookson
Journal:  Nature       Date:  2007-07-04       Impact factor: 49.962

8.  A genome-wide association study of pulmonary function measures in the Framingham Heart Study.

Authors:  Jemma B Wilk; Ting-Hsu Chen; Daniel J Gottlieb; Robert E Walter; Michael W Nagle; Brian J Brandler; Richard H Myers; Ingrid B Borecki; Edwin K Silverman; Scott T Weiss; George T O'Connor
Journal:  PLoS Genet       Date:  2009-03-20       Impact factor: 5.917

9.  A genome-wide association study in chronic obstructive pulmonary disease (COPD): identification of two major susceptibility loci.

Authors:  Sreekumar G Pillai; Dongliang Ge; Guohua Zhu; Xiangyang Kong; Kevin V Shianna; Anna C Need; Sheng Feng; Craig P Hersh; Per Bakke; Amund Gulsvik; Andreas Ruppert; Karin C Lødrup Carlsen; Allen Roses; Wayne Anderson; Stephen I Rennard; David A Lomas; Edwin K Silverman; David B Goldstein
Journal:  PLoS Genet       Date:  2009-03-20       Impact factor: 5.917

10.  Genome-wide scan on total serum IgE levels identifies FCER1A as novel susceptibility locus.

Authors:  Stephan Weidinger; Christian Gieger; Elke Rodriguez; Hansjörg Baurecht; Martin Mempel; Norman Klopp; Henning Gohlke; Stefan Wagenpfeil; Markus Ollert; Johannes Ring; Heidrun Behrendt; Joachim Heinrich; Natalija Novak; Thomas Bieber; Ursula Krämer; Dietrich Berdel; Andrea von Berg; Carl Peter Bauer; Olf Herbarth; Sibylle Koletzko; Holger Prokisch; Divya Mehta; Thomas Meitinger; Martin Depner; Erika von Mutius; Liming Liang; Miriam Moffatt; William Cookson; Michael Kabesch; H-Erich Wichmann; Thomas Illig
Journal:  PLoS Genet       Date:  2008-08-22       Impact factor: 5.917

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  5 in total

Review 1.  Update in environmental and occupational medicine 2010.

Authors:  G R Scott Budinger; Gökhan M Mutlu
Journal:  Am J Respir Crit Care Med       Date:  2011-06-15       Impact factor: 21.405

Review 2.  The genetics of asthma and allergic disease: a 21st century perspective.

Authors:  Carole Ober; Tsung-Chieh Yao
Journal:  Immunol Rev       Date:  2011-07       Impact factor: 12.988

Review 3.  Genetics of complex respiratory diseases: implications for pathophysiology and pharmacology studies.

Authors:  Ma'en Obeidat; Ian P Hall
Journal:  Br J Pharmacol       Date:  2011-05       Impact factor: 8.739

4.  Resistin-like molecule α1 (Fizz1) recruits lung dendritic cells without causing pulmonary fibrosis.

Authors:  Satish K Madala; Ramakrishna Edukulla; Katy R Davis; Stephanie Schmidt; Cynthia Davidson; Joseph A Kitzmiller; William D Hardie; Thomas R Korfhagen
Journal:  Respir Res       Date:  2012-06-22

Review 5.  Candidate genes for COPD: current evidence and research.

Authors:  Woo Jin Kim; Sang Do Lee
Journal:  Int J Chron Obstruct Pulmon Dis       Date:  2015-10-19
  5 in total

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