Literature DB >> 20554447

The REM phase of gene regulation.

Matthias W Hentze1, Thomas Preiss.   

Abstract

'Classic' enzymes carry out the housekeeping functions of intermediary metabolism. The past decades have seen a steady trickle of reports of several of these enzymes 'moonlighting' as RNA-binding proteins. Although evidence for a physiological role for RNA binding is strong in a few individual examples, no systematic concept has been proposed for the overall phenomenon. We suggest that these diverse observations might herald the existence of currently hidden post-transcriptional regulatory networks between intermediary metabolism and gene expression based on RNA, enzyme and metabolite interactions. We briefly summarize the evidence in support of such networks and discuss how current approaches can be employed for systematic analyses and integration into our understanding of cellular biology, given the technical and conceptual advances of the 'omics' age. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20554447     DOI: 10.1016/j.tibs.2010.05.009

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  55 in total

1.  From cis-regulatory elements to complex RNPs and back.

Authors:  Fátima Gebauer; Thomas Preiss; Matthias W Hentze
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

2.  The moonlighting RNA-binding activity of cytosolic serine hydroxymethyltransferase contributes to control compartmentalization of serine metabolism.

Authors:  Giulia Guiducci; Alessio Paone; Angela Tramonti; Giorgio Giardina; Serena Rinaldo; Amani Bouzidi; Maria C Magnifico; Marina Marani; Javier A Menendez; Alessandro Fatica; Alberto Macone; Alexandros Armaos; Gian G Tartaglia; Roberto Contestabile; Alessandro Paiardini; Francesca Cutruzzolà
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

3.  PUMPKIN, the Sole Plastid UMP Kinase, Associates with Group II Introns and Alters Their Metabolism.

Authors:  Lisa-Marie Schmid; Lisa Ohler; Torsten Möhlmann; Andreas Brachmann; Jose M Muiño; Dario Leister; Jörg Meurer; Nikolay Manavski
Journal:  Plant Physiol       Date:  2018-11-08       Impact factor: 8.340

Review 4.  Metabolite sensing in eukaryotic mRNA biology.

Authors:  Carina C Clingman; Sean P Ryder
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-05-07       Impact factor: 9.957

Review 5.  The structure, function and evolution of proteins that bind DNA and RNA.

Authors:  William H Hudson; Eric A Ortlund
Journal:  Nat Rev Mol Cell Biol       Date:  2014-10-01       Impact factor: 94.444

6.  TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs.

Authors:  Annkatrin Bressin; Roman Schulte-Sasse; Davide Figini; Erika C Urdaneta; Benedikt M Beckmann; Annalisa Marsico
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

Review 7.  Fueling immunity: insights into metabolism and lymphocyte function.

Authors:  Erika L Pearce; Maya C Poffenberger; Chih-Hao Chang; Russell G Jones
Journal:  Science       Date:  2013-10-11       Impact factor: 47.728

Review 8.  Eukaryotic RNA 5'-End NAD+ Capping and DeNADding.

Authors:  Megerditch Kiledjian
Journal:  Trends Cell Biol       Date:  2018-03-12       Impact factor: 20.808

Review 9.  Specificity and nonspecificity in RNA-protein interactions.

Authors:  Eckhard Jankowsky; Michael E Harris
Journal:  Nat Rev Mol Cell Biol       Date:  2015-08-19       Impact factor: 94.444

10.  Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae.

Authors:  Nikoleta G Tsvetanova; Daniel M Klass; Julia Salzman; Patrick O Brown
Journal:  PLoS One       Date:  2010-09-10       Impact factor: 3.240

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