Literature DB >> 20552664

Glycoside hydrolases: catalytic base/nucleophile diversity.

Thu V Vuong1, David B Wilson.   

Abstract

Recent studies have shown that a number of glycoside hydrolase families do not follow the classical catalytic mechanisms, as they lack a typical catalytic base/nucleophile. A variety of mechanisms are used to replace this function, including substrate-assisted catalysis, a network of several residues, and the use of non-carboxylate residues or exogenous nucleophiles. Removal of the catalytic base/nucleophile by mutation can have a profound impact on substrate specificity, producing enzymes with completely new functions.

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Year:  2010        PMID: 20552664     DOI: 10.1002/bit.22838

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  26 in total

1.  Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.

Authors:  Qun Wan; Jerry M Parks; B Leif Hanson; Suzanne Zoe Fisher; Andreas Ostermann; Tobias E Schrader; David E Graham; Leighton Coates; Paul Langan; Andrey Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

Review 2.  Recent biotechnological progress in enzymatic synthesis of glycosides.

Authors:  Nguyen Huy Thuan; Jae Kyung Sohng
Journal:  J Ind Microbiol Biotechnol       Date:  2013-09-05       Impact factor: 3.346

3.  Active site and laminarin binding in glycoside hydrolase family 55.

Authors:  Christopher M Bianchetti; Taichi E Takasuka; Sam Deutsch; Hannah S Udell; Eric J Yik; Lai F Bergeman; Brian G Fox
Journal:  J Biol Chem       Date:  2015-03-09       Impact factor: 5.157

4.  Kinetic and molecular dynamics study of inhibition and transglycosylation in Hypocrea jecorina family 3 β-glucosidases.

Authors:  Inacrist Geronimo; Patricia Ntarima; Kathleen Piens; Mikael Gudmundsson; Henrik Hansson; Mats Sandgren; Christina M Payne
Journal:  J Biol Chem       Date:  2019-01-02       Impact factor: 5.157

5.  Cell-free translation of biofuel enzymes.

Authors:  Taichi E Takasuka; Johnnie A Walker; Lai F Bergeman; Kirk A Vander Meulen; Shin-ichi Makino; Nathaniel L Elsen; Brian G Fox
Journal:  Methods Mol Biol       Date:  2014

6.  Identification and functional analysis of a gene encoding β-glucosidase from the brown-rot basidiomycete Fomitopsis palustris.

Authors:  Hwang-Woo Ji; Chang-Jun Cha
Journal:  J Microbiol       Date:  2011-01-09       Impact factor: 3.422

7.  Structural insights into the catalytic mechanism of a novel glycoside hydrolase family 113 β-1,4-mannanase from Amphibacillus xylanus.

Authors:  Xin You; Zhen Qin; Qiaojuan Yan; Shaoqing Yang; Yanxiao Li; Zhengqiang Jiang
Journal:  J Biol Chem       Date:  2018-06-05       Impact factor: 5.157

8.  Ega3 from the fungal pathogen Aspergillus fumigatus is an endo-α-1,4-galactosaminidase that disrupts microbial biofilms.

Authors:  Natalie C Bamford; François Le Mauff; Adithya S Subramanian; Patrick Yip; Claudia Millán; Yongzhen Zhang; Caitlin Zacharias; Adam Forman; Mark Nitz; Jeroen D C Codée; Isabel Usón; Donald C Sheppard; P Lynne Howell
Journal:  J Biol Chem       Date:  2019-08-15       Impact factor: 5.157

9.  Phylogenetic distribution of potential cellulases in bacteria.

Authors:  Renaud Berlemont; Adam C Martiny
Journal:  Appl Environ Microbiol       Date:  2012-12-21       Impact factor: 4.792

10.  Loop motions important to product expulsion in the Thermobifida fusca glycoside hydrolase family 6 cellobiohydrolase from structural and computational studies.

Authors:  Miao Wu; Lintao Bu; Thu V Vuong; David B Wilson; Michael F Crowley; Mats Sandgren; Jerry Ståhlberg; Gregg T Beckham; Henrik Hansson
Journal:  J Biol Chem       Date:  2013-09-30       Impact factor: 5.157

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