Literature DB >> 20550922

Fast and forceful refolding of stretched alpha-helical solenoid proteins.

Minkyu Kim1, Khadar Abdi, Gwangrog Lee, Mahir Rabbi, Whasil Lee, Ming Yang, Christopher J Schofield, Vann Bennett, Piotr E Marszalek.   

Abstract

Anfinsen's thermodynamic hypothesis implies that proteins can encode for stretching through reversible loss of structure. However, large in vitro extensions of proteins that occur through a progressive unfolding of their domains typically dissipate a significant amount of energy, and therefore are not thermodynamically reversible. Some coiled-coil proteins have been found to stretch nearly reversibly, although their extension is typically limited to 2.5 times their folded length. Here, we report investigations on the mechanical properties of individual molecules of ankyrin-R, beta-catenin, and clathrin, which are representative examples of over 800 predicted human proteins composed of tightly packed alpha-helical repeats (termed ANK, ARM, or HEAT repeats, respectively) that form spiral-shaped protein domains. Using atomic force spectroscopy, we find that these polypeptides possess unprecedented stretch ratios on the order of 10-15, exceeding that of other proteins studied so far, and their extension and relaxation occurs with minimal energy dissipation. Their sequence-encoded elasticity is governed by stepwise unfolding of small repeats, which upon relaxation of the stretching force rapidly and forcefully refold, minimizing the hysteresis between the stretching and relaxing parts of the cycle. Thus, we identify a new class of proteins that behave as highly reversible nanosprings that have the potential to function as mechanosensors in cells and as building blocks in springy nanostructures. Our physical view of the protein component of cells as being comprised of predominantly inextensible structural elements under tension may need revision to incorporate springs. (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20550922      PMCID: PMC2884255          DOI: 10.1016/j.bpj.2010.02.054

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  48 in total

Review 1.  Spectrin and ankyrin-based pathways: metazoan inventions for integrating cells into tissues.

Authors:  V Bennett; A J Baines
Journal:  Physiol Rev       Date:  2001-07       Impact factor: 37.312

2.  Reverse engineering of the giant muscle protein titin.

Authors:  Hongbin Li; Wolfgang A Linke; Andres F Oberhauser; Mariano Carrion-Vazquez; Jason G Kerkvliet; Hui Lu; Piotr E Marszalek; Julio M Fernandez
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

3.  The folding pathway of a fast-folding immunoglobulin domain revealed by single-molecule mechanical experiments.

Authors:  Ingo Schwaiger; Michael Schleicher; Angelika A Noegel; Matthias Rief
Journal:  EMBO Rep       Date:  2005-01       Impact factor: 8.807

4.  One rotary mechanism for F1-ATPase over ATP concentrations from millimolar down to nanomolar.

Authors:  Naoyoshi Sakaki; Rieko Shimo-Kon; Kengo Adachi; Hiroyasu Itoh; Shou Furuike; Eiro Muneyuki; Masasuke Yoshida; Kazuhiko Kinosita
Journal:  Biophys J       Date:  2004-12-30       Impact factor: 4.033

5.  In search of the hair-cell gating spring elastic properties of ankyrin and cadherin repeats.

Authors:  Marcos Sotomayor; David P Corey; Klaus Schulten
Journal:  Structure       Date:  2005-04       Impact factor: 5.006

6.  Spectrin domains lose cooperativity in forced unfolding.

Authors:  Lucy G Randles; Ross W S Rounsevell; Jane Clarke
Journal:  Biophys J       Date:  2006-11-03       Impact factor: 4.033

7.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

8.  The molecular elasticity of the extracellular matrix protein tenascin.

Authors:  A F Oberhauser; P E Marszalek; H P Erickson; J M Fernandez
Journal:  Nature       Date:  1998-05-14       Impact factor: 49.962

9.  Polysaccharide elasticity governed by chair-boat transitions of the glucopyranose ring.

Authors:  P E Marszalek; A F Oberhauser; Y P Pang; J M Fernandez
Journal:  Nature       Date:  1998-12-17       Impact factor: 49.962

10.  Fibronectin forms the most extensible biological fibers displaying switchable force-exposed cryptic binding sites.

Authors:  Enrico Klotzsch; Michael L Smith; Kristopher E Kubow; Simon Muntwyler; William C Little; Felix Beyeler; Delphine Gourdon; Bradley J Nelson; Viola Vogel
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-13       Impact factor: 11.205

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  20 in total

1.  Mechanical anisotropy of ankyrin repeats.

Authors:  Whasil Lee; Xiancheng Zeng; Kristina Rotolo; Ming Yang; Christopher J Schofield; Vann Bennett; Weitao Yang; Piotr E Marszalek
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

2.  Dynamics of protein folding and cofactor binding monitored by single-molecule force spectroscopy.

Authors:  Yi Cao; Hongbin Li
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

3.  Low folding cooperativity of HP35 revealed by single-molecule force spectroscopy and molecular dynamics simulation.

Authors:  Chunmei Lv; Cheng Tan; Meng Qin; Dawei Zou; Yi Cao; Wei Wang
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

4.  Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations.

Authors:  Whasil Lee; Xiancheng Zeng; Huan-Xiang Zhou; Vann Bennett; Weitao Yang; Piotr E Marszalek
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

5.  Cytoskeleton-inspired artificial protein design to enhance polymer network elasticity.

Authors:  David S Knoff; Haley Szczublewski; Dallas Altamirano; Kareen A Fajardo Cortes; Minkyu Kim
Journal:  Macromolecules       Date:  2020-04-29       Impact factor: 5.985

6.  Inhibitor binding increases the mechanical stability of staphylococcal nuclease.

Authors:  Chien-Chung Wang; Tian-Yow Tsong; Yau-Heiu Hsu; Piotr E Marszalek
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

7.  Competing Pathways and Multiple Folding Nuclei in a Large Multidomain Protein, Luciferase.

Authors:  Zackary N Scholl; Weitao Yang; Piotr E Marszalek
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

8.  Mechanical properties of β-catenin revealed by single-molecule experiments.

Authors:  Alejandro Valbuena; Andrés Manuel Vera; Javier Oroz; Margarita Menéndez; Mariano Carrión-Vázquez
Journal:  Biophys J       Date:  2012-10-16       Impact factor: 4.033

9.  Chaperones rescue luciferase folding by separating its domains.

Authors:  Zackary N Scholl; Weitao Yang; Piotr E Marszalek
Journal:  J Biol Chem       Date:  2014-08-26       Impact factor: 5.157

10.  Hopping around an entropic barrier created by force.

Authors:  Ronen Berkovich; Sergi Garcia-Manyes; Joseph Klafter; Michael Urbakh; Julio M Fernández
Journal:  Biochem Biophys Res Commun       Date:  2010-11-02       Impact factor: 3.575

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