Literature DB >> 20543050

Recombineering using RecTE from Pseudomonas syringae.

Bryan Swingle1, Zhongmeng Bao, Eric Markel, Alan Chambers, Samuel Cartinhour.   

Abstract

In this report, we describe the identification of functions that promote genomic recombination of linear DNA introduced into Pseudomonas cells by electroporation. The genes encoding these functions were identified in Pseudomonas syringae pv. syringae B728a based on similarity to the lambda Red Exo/Beta and RecET proteins encoded by the lambda and Rac bacteriophages of Escherichia coli. The ability of the pseudomonad-encoded proteins to promote recombination was tested in P. syringae pv. tomato DC3000 using a quantitative assay based on recombination frequency. The results show that the Pseudomonas RecT homolog is sufficient to promote recombination of single-stranded DNA oligonucleotides and that efficient recombination of double-stranded DNA requires the expression of both the RecT and RecE homologs. Additionally, we illustrate the utility of this recombineering system to make targeted gene disruptions in the P. syringae chromosome.

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Year:  2010        PMID: 20543050      PMCID: PMC2916495          DOI: 10.1128/AEM.00911-10

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  42 in total

1.  PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S. cerevisiae.

Authors:  A Wach
Journal:  Yeast       Date:  1996-03-15       Impact factor: 3.239

2.  DNA strand invasion promoted by Escherichia coli RecT protein.

Authors:  P Noirot; R D Kolodner
Journal:  J Biol Chem       Date:  1998-05-15       Impact factor: 5.157

3.  Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa.

Authors:  Larry A Gallagher; Susan L McKnight; Marina S Kuznetsova; Everett C Pesci; Colin Manoil
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

4.  A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation.

Authors:  Kyoung-Hee Choi; Ayush Kumar; Herbert P Schweizer
Journal:  J Microbiol Methods       Date:  2005-06-28       Impact factor: 2.363

5.  A new logic for DNA engineering using recombination in Escherichia coli.

Authors:  Y Zhang; F Buchholz; J P Muyrers; A F Stewart
Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330

6.  Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages.

Authors:  Simanti Datta; Nina Costantino; Xiaomei Zhou; Donald L Court
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-29       Impact factor: 11.205

7.  Construction of improved Escherichia-Pseudomonas shuttle vectors derived from pUC18/19 and sequence of the region required for their replication in Pseudomonas aeruginosa.

Authors:  S E West; H P Schweizer; C Dall; A K Sample; L J Runyen-Janecky
Journal:  Gene       Date:  1994-10-11       Impact factor: 3.688

Review 8.  Recombineering mycobacteria and their phages.

Authors:  Julia C van Kessel; Laura J Marinelli; Graham F Hatfull
Journal:  Nat Rev Microbiol       Date:  2008-11       Impact factor: 60.633

9.  Genetic and molecular analyses of the C-terminal region of the recE gene from the Rac prophage of Escherichia coli K-12 reveal the recT gene.

Authors:  A J Clark; V Sharma; S Brenowitz; C C Chu; S Sandler; L Satin; A Templin; I Berger; A Cohen
Journal:  J Bacteriol       Date:  1993-12       Impact factor: 3.490

10.  CDD: specific functional annotation with the Conserved Domain Database.

Authors:  Aron Marchler-Bauer; John B Anderson; Farideh Chitsaz; Myra K Derbyshire; Carol DeWeese-Scott; Jessica H Fong; Lewis Y Geer; Renata C Geer; Noreen R Gonzales; Marc Gwadz; Siqian He; David I Hurwitz; John D Jackson; Zhaoxi Ke; Christopher J Lanczycki; Cynthia A Liebert; Chunlei Liu; Fu Lu; Shennan Lu; Gabriele H Marchler; Mikhail Mullokandov; James S Song; Asba Tasneem; Narmada Thanki; Roxanne A Yamashita; Dachuan Zhang; Naigong Zhang; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2008-11-04       Impact factor: 16.971

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  36 in total

Review 1.  Engineering ecosystems and synthetic ecologies.

Authors:  Michael T Mee; Harris H Wang
Journal:  Mol Biosyst       Date:  2012-10

Review 2.  Gene replacement techniques for Escherichia coli genome modification.

Authors:  Mahesh Madyagol; Hend Al-Alami; Zdeno Levarski; Hana Drahovská; Ján Turňa; Stanislav Stuchlík
Journal:  Folia Microbiol (Praha)       Date:  2011-05-26       Impact factor: 2.099

3.  Coupling the CRISPR/Cas9 System with Lambda Red Recombineering Enables Simplified Chromosomal Gene Replacement in Escherichia coli.

Authors:  Michael E Pyne; Murray Moo-Young; Duane A Chung; C Perry Chou
Journal:  Appl Environ Microbiol       Date:  2015-05-22       Impact factor: 4.792

4.  Effects of three different nucleoid-associated proteins encoded on IncP-7 plasmid pCAR1 on host Pseudomonas putida KT2440.

Authors:  Chiho Suzuki-Minakuchi; Ryusuke Hirotani; Masaki Shintani; Toshiharu Takeda; Yurika Takahashi; Kazuhiro Matsui; Delyana Vasileva; Choong-Soo Yun; Kazunori Okada; Hisakazu Yamane; Hideaki Nojiri
Journal:  Appl Environ Microbiol       Date:  2015-02-13       Impact factor: 4.792

Review 5.  Recombination promoted by DNA viruses: phage λ to herpes simplex virus.

Authors:  Sandra K Weller; James A Sawitzke
Journal:  Annu Rev Microbiol       Date:  2014-06-09       Impact factor: 15.500

6.  CRISPR/Cas9-Assisted Seamless Genome Editing in Lactobacillus plantarum and Its Application in N-Acetylglucosamine Production.

Authors:  Ding Zhou; Zhennan Jiang; Qingxiao Pang; Yuan Zhu; Qian Wang; Qingsheng Qi
Journal:  Appl Environ Microbiol       Date:  2019-10-16       Impact factor: 4.792

7.  Genetic tools for reliable gene expression and recombineering in Pseudomonas putida.

Authors:  Taylor B Cook; Jacqueline M Rand; Wasti Nurani; Dylan K Courtney; Sophia A Liu; Brian F Pfleger
Journal:  J Ind Microbiol Biotechnol       Date:  2018-01-03       Impact factor: 3.346

8.  Probing cellular processes with oligo-mediated recombination and using the knowledge gained to optimize recombineering.

Authors:  James A Sawitzke; Nina Costantino; Xin-Tian Li; Lynn C Thomason; Mikhail Bubunenko; Carolyn Court; Donald L Court
Journal:  J Mol Biol       Date:  2011-01-19       Impact factor: 5.469

Review 9.  Structure and mechanism of the Red recombination system of bacteriophage λ.

Authors:  Brian J Caldwell; Charles E Bell
Journal:  Prog Biophys Mol Biol       Date:  2019-03-21       Impact factor: 3.667

10.  Identification of phage recombinase function unit in genus Corynebacterium.

Authors:  Yizhao Chang; Qian Wang; Tianyuan Su; Qingsheng Qi
Journal:  Appl Microbiol Biotechnol       Date:  2021-06-16       Impact factor: 4.813

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