Literature DB >> 20543035

Improved dsrA-based terminal restriction fragment length polymorphism analysis of sulfate-reducing bacteria.

Daniel Santillano1, Antje Boetius, Alban Ramette.   

Abstract

To better describe the community structure of sulfate-reducing bacteria in environmental systems, we compared several dissimilatory sulfite reductase (dsr) primer sets for terminal restriction fragment length polymorphism application. A new reverse primer that increased allelic diversity estimates up to 5-fold was applied to hydrocarbon seep samples to examine the relationship between guild activity and diversity.

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Year:  2010        PMID： 20543035      PMCID： PMC2916486          DOI： 10.1128/AEM.03004-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  20 in total

1.  Diversity of sulfate-reducing bacteria in oxic and anoxic regions of a microbial mat characterized by comparative analysis of dissimilatory sulfite reductase genes.

Authors:  D Minz; J L Flax; S J Green; G Muyzer; Y Cohen; M Wagner; B E Rittmann; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

2.  EMBOSS: the European Molecular Biology Open Software Suite.

Authors:  P Rice; I Longden; A Bleasby
Journal:  Trends Genet       Date:  2000-06       Impact factor: 11.639

3.  Asphalt volcanism and chemosynthetic life in the Campeche Knolls, Gulf of Mexico.

Authors:  I R MacDonald; G Bohrmann; E Escobar; F Abegg; P Blanchon; V Blinova; W Brückmann; M Drews; A Eisenhauer; X Han; K Heeschen; F Meier; C Mortera; T Naehr; B Orcutt; B Bernard; J Brooks; M de Faragó
Journal:  Science       Date:  2004-05-14       Impact factor: 47.728

4.  ARB: a software environment for sequence data.

Authors:  Wolfgang Ludwig; Oliver Strunk; Ralf Westram; Lothar Richter; Harald Meier; Arno Buchner; Tina Lai; Susanne Steppi; Gangolf Jobb; Wolfram Förster; Igor Brettske; Stefan Gerber; Anton W Ginhart; Oliver Gross; Silke Grumann; Stefan Hermann; Ralf Jost; Andreas König; Thomas Liss; Ralph Lüssmann; Michael May; Björn Nonhoff; Boris Reichel; Robert Strehlow; Alexandros Stamatakis; Norbert Stuckmann; Alexander Vilbig; Michael Lenke; Thomas Ludwig; Arndt Bode; Karl-Heinz Schleifer
Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

5.  Microarray and functional gene analyses of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal cooccurrence of recognized genera and novel lineages.

Authors:  Alexander Loy; Kirsten Küsel; Angelika Lehner; Harold L Drake; Michael Wagner
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

6.  Phylogeography of sulfate-reducing bacteria among disturbed sediments, disclosed by analysis of the dissimilatory sulfite reductase genes (dsrAB).

Authors:  J R Pérez-Jiménez; L J Kerkhof
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

7.  Enumeration and identification of dominant types of sulfate-reducing bacteria in pulp from a paper-recycling plant: a multiphasic approach.

Authors:  Kasper Urup Kjeldsen; Lone Tang; Maria Giltoft Jørgensen; Kjeld Ingvorsen
Journal:  FEMS Microbiol Ecol       Date:  2009-06-04       Impact factor: 4.194

8.  Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration.

Authors:  M Wagner; A J Roger; J L Flax; G A Brusseau; D A Stahl
Journal:  J Bacteriol       Date:  1998-06       Impact factor: 3.490

9.  Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.

Authors:  W T Liu; T L Marsh; H Cheng; L J Forney
Journal:  Appl Environ Microbiol       Date:  1997-11       Impact factor: 4.792

10.  Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin.

Authors:  Ashita Dhillon; Andreas Teske; Jesse Dillon; David A Stahl; Mitchell L Sogin
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792
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  6 in total

1.  Occurrence and activity of sulphate reducing bacteria in aerobic activated sludge systems.

Authors:  T P H van den Brand; K Roest; G H Chen; D Brdjanovic; M C M van Loosdrecht
Journal:  World J Microbiol Biotechnol       Date:  2015-02-04       Impact factor: 3.312

2.  Microbial composition affects the functioning of estuarine sediments.

Authors:  Heather E Reed; Jennifer B H Martiny
Journal:  ISME J       Date:  2012-12-13       Impact factor: 10.302

3.  Ecological and genomic profiling of anaerobic methane-oxidizing archaea in a deep granitic environment.

Authors:  Kohei Ino; Alex W Hernsdorf; Uta Konno; Mariko Kouduka; Katsunori Yanagawa; Shingo Kato; Michinari Sunamura; Akinari Hirota; Yoko S Togo; Kazumasa Ito; Akari Fukuda; Teruki Iwatsuki; Takashi Mizuno; Daisuke D Komatsu; Urumu Tsunogai; Toyoho Ishimura; Yuki Amano; Brian C Thomas; Jillian F Banfield; Yohey Suzuki
Journal:  ISME J       Date:  2017-09-08       Impact factor: 10.302

4.  Isolation and characterization of novel sulfate-reducing bacterium capable of anaerobic degradation of p-xylene.

Authors:  Yuriko Higashioka; Hisaya Kojima; Manabu Fukui
Journal:  Microbes Environ       Date:  2012-03-23       Impact factor: 2.912

5.  Dynamics of Sulfate-Reducing Bacteria Community Structure in Surface Sediment of a Seasonally Hypoxic Enclosed Bay.

Authors:  Fumiaki Mori; Yu Umezawa; Ryuji Kondo; Minoru Wada
Journal:  Microbes Environ       Date:  2018-11-17       Impact factor: 2.912

6.  Methylation of mercury in earthworms and the effect of mercury on the associated bacterial communities.

Authors:  Stephan Raphael Rieder; Ivano Brunner; Otto Daniel; Bian Liu; Beat Frey
Journal:  PLoS One       Date:  2013-04-05       Impact factor: 3.240
  6 in total

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