Literature DB >> 20542682

Unravelling the design principles for single protein mechanical strength.

Neal Crampton1, David J Brockwell.   

Abstract

In recent years single molecule manipulation techniques have improved to the extent that measurements of the mechanical strength of single proteins can now be undertaken routinely. This powerful new tool, coupled with theoretical frameworks to characterise the unfolding process, has enabled significant progress to be made in understanding the physical mechanisms that underlie protein mechanical strength. These design concepts have allowed the search for proteins with novel, mechanically strong folds to be automated and for previously mechanically characterised proteins to be engineered rationally. Methods to achieve the latter are diverse and include re-engineering of specific hydrophobic core residues, changing solvent conditions and the 'cross-linking' of side-chains that are separated in the rate-limiting unfolding transition. Predicting the mechanical behaviour of larger proteins and those with more complex structures remains a significant challenge while on-going instrument development is beginning to allow the examination of mechanical strength of protein across a wide range of force loading rates. The integral role of force in biology and the potential for exploitation of catalytic and structural proteins as functional bio-materials makes this a particularly important area of research. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20542682     DOI: 10.1016/j.sbi.2010.05.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  26 in total

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Authors:  Bijan Zakeri; Jacob O Fierer; Emrah Celik; Emily C Chittock; Ulrich Schwarz-Linek; Vincent T Moy; Mark Howarth
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-24       Impact factor: 11.205

Review 2.  Ratcheting up protein translocation with anthrax toxin.

Authors:  Geoffrey K Feld; Michael J Brown; Bryan A Krantz
Journal:  Protein Sci       Date:  2012-03-30       Impact factor: 6.725

3.  Dynamics of protein folding and cofactor binding monitored by single-molecule force spectroscopy.

Authors:  Yi Cao; Hongbin Li
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

4.  Prying open single GroES ring complexes by force reveals cooperativity across domains.

Authors:  Akiko Ikeda-Kobayashi; Yukinori Taniguchi; David J Brockwell; Emanuele Paci; Masaru Kawakami
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

5.  Engineering proteins with enhanced mechanical stability by force-specific sequence motifs.

Authors:  Wenzhe Lu; Surendra S Negi; Andres F Oberhauser; Werner Braun
Journal:  Proteins       Date:  2012-02-10

6.  Single-molecule studies on PolySUMO proteins reveal their mechanical flexibility.

Authors:  Hema Chandra Kotamarthi; Riddhi Sharma; Sri Rama Koti Ainavarapu
Journal:  Biophys J       Date:  2013-05-21       Impact factor: 4.033

7.  Direct observation of a force-induced switch in the anisotropic mechanical unfolding pathway of a protein.

Authors:  Bharat Jagannathan; Phillip J Elms; Carlos Bustamante; Susan Marqusee
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

8.  The molecular mechanism underlying mechanical anisotropy of the protein GB1.

Authors:  Yongnan Devin Li; Guillaume Lamour; Jörg Gsponer; Peng Zheng; Hongbin Li
Journal:  Biophys J       Date:  2012-12-05       Impact factor: 4.033

9.  Effects of ligand binding on the mechanical stability of protein GB1 studied by steered molecular dynamics simulation.

Authors:  Ji-Guo Su; Shu-Xin Zhao; Xiao-Feng Wang; Chun-Hua Li; Jing-Yuan Li
Journal:  J Mol Model       Date:  2016-07-22       Impact factor: 1.810

10.  Single-molecule experiments reveal the flexibility of a Per-ARNT-Sim domain and the kinetic partitioning in the unfolding pathway under force.

Authors:  Xiang Gao; Meng Qin; Puguang Yin; Junyi Liang; Jun Wang; Yi Cao; Wei Wang
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

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