Literature DB >> 20535730

Polar bears, antibiotics, and the evolving ribosome (Nobel Lecture).

Ada Yonath1.   

Abstract

High-resolution structures of ribosomes, the cellular machines that translate the genetic code into proteins, revealed the decoding mechanism, detected the mRNA path, identified the sites of the tRNA molecules in the ribosome, elucidated the position and the nature of the nascent proteins exit tunnel, illuminated the interactions of the ribosome with non-ribosomal factors, such as the initiation, release and recycling factors, and provided valuable information on ribosomal antibiotics, their binding sites, modes of action, principles of selectivity and the mechanisms leading to their resistance. Notably, these structures proved that the ribosome is a ribozyme whose active site, namely where the peptide bonds are being formed, is situated within a universal symmetrical region that is embedded in the otherwise asymmetric ribosome structure. As this symmetrical region is highly conserved and provides the machinery required for peptide bond formation and for ribosome polymerase activity, it may be the remnant of the proto-ribosome, a dimeric prebiotic machine that formed peptide bonds and non-coded polypeptide chains. Structures of complexes of ribosomes with antibiotics targeting them revealed the principles allowing for their clinical use, identified resistance mechanisms and showed the structural bases for discriminating pathogenic bacteria from hosts, hence providing valuable structural information for antibiotics improvement and for the design of novel compounds that can serve as antibiotics.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20535730     DOI: 10.1002/anie.201001297

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  20 in total

Review 1.  Artificial Molecular Machines.

Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

Review 2.  Probing the mechanisms of translation with force.

Authors:  Christian M Kaiser; Ignacio Tinoco
Journal:  Chem Rev       Date:  2014-01-09       Impact factor: 60.622

3.  Primitive selection of the fittest emerging through functional synergy in nucleopeptide networks.

Authors:  Anil Kumar Bandela; Nathaniel Wagner; Hava Sadihov; Sara Morales-Reina; Agata Chotera-Ouda; Kingshuk Basu; Rivka Cohen-Luria; Andrés de la Escosura; Gonen Ashkenasy
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-02       Impact factor: 11.205

4.  Hydrogenation catalyst generates cyclic peptide stereocentres in sequence.

Authors:  Diane N Le; Eric Hansen; Hasan A Khan; Byoungmoo Kim; Olaf Wiest; Vy M Dong
Journal:  Nat Chem       Date:  2018-07-30       Impact factor: 24.427

5.  Converting structural information into an allosteric-energy-based picture for elongation factor Tu activation by the ribosome.

Authors:  Andrew J Adamczyk; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-26       Impact factor: 11.205

6.  Stereodivergent synthesis with a programmable molecular machine.

Authors:  Salma Kassem; Alan T L Lee; David A Leigh; Vanesa Marcos; Leoni I Palmer; Simone Pisano
Journal:  Nature       Date:  2017-09-20       Impact factor: 49.962

Review 7.  Why nature really chose phosphate.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Ram B Prasad; Arieh Warshel
Journal:  Q Rev Biophys       Date:  2013-01-15       Impact factor: 5.318

8.  Peptide Bond Formation Mechanism Catalyzed by Ribosome.

Authors:  Katarzyna Świderek; Sergio Marti; Iñaki Tuñón; Vicent Moliner; Juan Bertran
Journal:  J Am Chem Soc       Date:  2015-09-10       Impact factor: 15.419

9.  Functionalized polystyrene supports for solid-phase synthesis of glycyl-, alanyl-, and isoleucyl-RNA conjugates as hydrolysis-resistant mimics of peptidyl-tRNAs.

Authors:  Jessica Steger; Ronald Micura
Journal:  Bioorg Med Chem       Date:  2011-07-19       Impact factor: 3.641

10.  Anti-plasmodial action of de novo-designed, cationic, lysine-branched, amphipathic, helical peptides.

Authors:  Naveen K Kaushik; Jyotsna Sharma; Dinkar Sahal
Journal:  Malar J       Date:  2012-08-01       Impact factor: 2.979

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.