Literature DB >> 20533838

Mutagenesis of Klebsiella aerogenes UreG to probe nickel binding and interactions with other urease-related proteins.

Jodi L Boer1, Soledad Quiroz-Valenzuela, Kimberly L Anderson, Robert P Hausinger.   

Abstract

UreG is a GTPase required for assembly of the nickel-containing active site of urease. Herein, a Strep-tagged Klebsiella aerogenes UreG (UreG(Str)) and selected site-directed variants of UreG(Str) were constructed for studying the in vivo effects on urease activation in recombinant Escherichia coli cells, characterizing properties of the purified proteins, and analysis of in vivo and in vitro protein-protein interactions. Whereas the Strep tag had no effect on UreG's ability to activate urease, enzyme activity was essentially abolished in the K20A, D49A, C72A, H74A, D80A, and S111A UreG(Str) variants, with diminished activity also noted with E25A, C28A, and S115A proteins. Lys20 and Asp49 are likely to function in binding/hydrolysis of GTP and binding of Mg, respectively. UreG(Str) binds one nickel or zinc ion per monomer (K(d) approximately 5 microM for each metal ion) at a binding site that includes Cys72, as shown by a 12-fold increased K(d) for nickel ions using C72A UreG(Str) and by a thiolate-to-nickel charge-transfer band that is absent in the mutant protein. Based on UreG homology to HypB, a GTPase needed for hydrogenase assembly, along with the mutation results, His74 is likely to be an additional metal ligand. In vivo pull-down assays revealed Asp80 as critical for stabilizing UreG(Str) interaction with the UreABC-UreDF complex. In vitro pull-down assays demonstrated UreG binding to UreE, with the interaction enhanced by nickel or zinc ions. The metallochaperone UreE is suggested to transfer its bound nickel to UreG in the UreABC-UreDFG complex, with the metal ion subsequently transferring to UreD and then into the nascent active site of urease in a GTP-dependent process.

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Year:  2010        PMID: 20533838      PMCID: PMC2912431          DOI: 10.1021/bi1004987

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  42 in total

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Authors:  Detlef D Leipe; Yuri I Wolf; Eugene V Koonin; L Aravind
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2.  Crystal structure of the Escherichia coli YjiA protein suggests a GTP-dependent regulatory function.

Authors:  Pavel P Khil; Galina Obmolova; Alexey Teplyakov; Andrew J Howard; Gary L Gilliland; R Daniel Camerini-Otero
Journal:  Proteins       Date:  2004-02-01

3.  Crystallization and preliminary X-ray structure determination of jack bean urease with a bound antibody fragment.

Authors:  Louisa Sheridan; Carrie M Wilmot; Karen D Cromie; Paul van der Logt; Simon E V Phillips
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-01-24

4.  Crystal structure of Klebsiella aerogenes UreE, a nickel-binding metallochaperone for urease activation.

Authors:  H K Song; S B Mulrooney; R Huber; R P Hausinger
Journal:  J Biol Chem       Date:  2001-10-08       Impact factor: 5.157

5.  Supramolecular assembly and acid resistance of Helicobacter pylori urease.

Authors:  N C Ha; S T Oh; J Y Sung; K A Cha; M H Lee; B H Oh
Journal:  Nat Struct Biol       Date:  2001-06

6.  The protein-protein interaction map of Helicobacter pylori.

Authors:  J C Rain; L Selig; H De Reuse; V Battaglia; C Reverdy; S Simon; G Lenzen; F Petel; J Wojcik; V Schächter; Y Chemama; A Labigne; P Legrain
Journal:  Nature       Date:  2001-01-11       Impact factor: 49.962

7.  UreE stimulation of GTP-dependent urease activation in the UreD-UreF-UreG-urease apoprotein complex.

Authors:  A Soriano; G J Colpas; R P Hausinger
Journal:  Biochemistry       Date:  2000-10-10       Impact factor: 3.162

8.  Structural basis for Ni(2+) transport and assembly of the urease active site by the metallochaperone UreE from Bacillus pasteurii.

Authors:  H Remaut; N Safarov; S Ciurli; J Van Beeumen
Journal:  J Biol Chem       Date:  2001-10-15       Impact factor: 5.157

9.  Nickel trafficking: insights into the fold and function of UreE, a urease metallochaperone.

Authors:  Francesco Musiani; Barbara Zambelli; Massimiliano Stola; Stefano Ciurli
Journal:  J Inorg Biochem       Date:  2004-05       Impact factor: 4.155

Review 10.  Interplay of metal ions and urease.

Authors:  Eric L Carter; Nicholas Flugga; Jodi L Boer; Scott B Mulrooney; Robert P Hausinger
Journal:  Metallomics       Date:  2009       Impact factor: 4.526

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  25 in total

1.  Function of UreB in Klebsiella aerogenes urease.

Authors:  Eric L Carter; Jodi L Boer; Mark A Farrugia; Nicholas Flugga; Christopher L Towns; Robert P Hausinger
Journal:  Biochemistry       Date:  2011-10-06       Impact factor: 3.162

2.  Unraveling the Helicobacter pylori UreG zinc binding site using X-ray absorption spectroscopy (XAS) and structural modeling.

Authors:  Vlad Martin-Diaconescu; Matteo Bellucci; Francesco Musiani; Stefano Ciurli; Michael J Maroney
Journal:  J Biol Inorg Chem       Date:  2011-11-09       Impact factor: 3.358

3.  Biochemical and structural studies on native and recombinant Glycine max UreG: a detailed characterization of a plant urease accessory protein.

Authors:  Rafael Real-Guerra; Fernanda Staniscuaski; Barbara Zambelli; Francesco Musiani; Stefano Ciurli; Célia R Carlini
Journal:  Plant Mol Biol       Date:  2012-01-22       Impact factor: 4.076

4.  Assembly of preactivation complex for urease maturation in Helicobacter pylori: crystal structure of UreF-UreH protein complex.

Authors:  Yu Hang Fong; Ho Chun Wong; Chi Pang Chuck; Yu Wai Chen; Hongzhe Sun; Kam-Bo Wong
Journal:  J Biol Chem       Date:  2011-10-19       Impact factor: 5.157

5.  Crystallographic and X-ray absorption spectroscopic characterization of Helicobacter pylori UreE bound to Ni²⁺ and Zn²⁺ reveals a role for the disordered C-terminal arm in metal trafficking.

Authors:  Katarzyna Banaszak; Vlad Martin-Diaconescu; Matteo Bellucci; Barbara Zambelli; Wojciech Rypniewski; Michael J Maroney; Stefano Ciurli
Journal:  Biochem J       Date:  2012-02-01       Impact factor: 3.857

6.  Selectivity of Ni(II) and Zn(II) binding to Sporosarcina pasteurii UreE, a metallochaperone in the urease assembly: a calorimetric and crystallographic study.

Authors:  Barbara Zambelli; Katarzyna Banaszak; Anna Merloni; Agnieszka Kiliszek; Wojciech Rypniewski; Stefano Ciurli
Journal:  J Biol Inorg Chem       Date:  2013-10-15       Impact factor: 3.358

7.  Intrinsic disorder and metal binding in UreG proteins from Archae hyperthermophiles: GTPase enzymes involved in the activation of Ni(II) dependent urease.

Authors:  Manfredi Miraula; Stefano Ciurli; Barbara Zambelli
Journal:  J Biol Inorg Chem       Date:  2015-04-07       Impact factor: 3.358

8.  The assembly of the plant urease activation complex and the essential role of the urease accessory protein G (UreG) in delivery of nickel to urease.

Authors:  Till Myrach; Anting Zhu; Claus-Peter Witte
Journal:  J Biol Chem       Date:  2017-07-14       Impact factor: 5.157

9.  Klebsiella aerogenes UreF: identification of the UreG binding site and role in enhancing the fidelity of urease activation.

Authors:  Jodi L Boer; Robert P Hausinger
Journal:  Biochemistry       Date:  2012-03-06       Impact factor: 3.162

Review 10.  Biosynthesis of the urease metallocenter.

Authors:  Mark A Farrugia; Lee Macomber; Robert P Hausinger
Journal:  J Biol Chem       Date:  2013-03-28       Impact factor: 5.157

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