Literature DB >> 20530900

Introduction of new tools for chemical biology research on microbial metabolites.

Hiroyuki Osada1.   

Abstract

Recently, high-throughput screening (HTS) has become the mainstream technique for drug discovery. Compounds that are synthesized by combinatorial chemistry might be more suitable than natural products to apply to HTS, because the purification procedure is a drawback of using natural products. Nevertheless, natural products remain an extremely important source of drugs. To overcome the demerits of natural products, we are constructing the RIKEN Natural Products Depository (NPDepo) that is focused primarily on microbial metabolites. In this review, I describe (i) engineering pathways for biosynthetic gene clusters of microbial metabolites, (ii) construction of fraction libraries of microbial metabolites, and (iii) the development of a new screening system using a chemical array and a protein library produced by GLORIA.

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Year:  2010        PMID: 20530900     DOI: 10.1271/bbb.100061

Source DB:  PubMed          Journal:  Biosci Biotechnol Biochem        ISSN: 0916-8451            Impact factor:   2.043


  13 in total

Review 1.  Chemical and biological studies of reveromycin A.

Authors:  Hiroyuki Osada
Journal:  J Antibiot (Tokyo)       Date:  2016-06-08       Impact factor: 2.649

2.  Fungus-Derived Neoechinulin B as a Novel Antagonist of Liver X Receptor, Identified by Chemical Genetics Using a Hepatitis C Virus Cell Culture System.

Authors:  Syo Nakajima; Koichi Watashi; Hirofumi Ohashi; Shinji Kamisuki; Jesus Izaguirre-Carbonell; Andrew Tae-Jun Kwon; Harukazu Suzuki; Michiyo Kataoka; Senko Tsukuda; Maiko Okada; Meng Ling Moi; Toshifumi Takeuchi; Minetaro Arita; Ryosuke Suzuki; Hideki Aizaki; Takanobu Kato; Tadaki Suzuki; Hideki Hasegawa; Tomohiko Takasaki; Fumio Sugawara; Takaji Wakita
Journal:  J Virol       Date:  2016-09-29       Impact factor: 5.103

3.  Crystal structure of the predicted phospholipase LYPLAL1 reveals unexpected functional plasticity despite close relationship to acyl protein thioesterases.

Authors:  Marco Bürger; Tobias J Zimmermann; Yasumitsu Kondoh; Patricia Stege; Nobumoto Watanabe; Hiroyuki Osada; Herbert Waldmann; Ingrid R Vetter
Journal:  J Lipid Res       Date:  2011-11-03       Impact factor: 5.922

4.  Identification of a novel small molecule that inhibits deacetylase but not defatty-acylase reaction catalysed by SIRT2.

Authors:  Norio Kudo; Akihiro Ito; Mayumi Arata; Akiko Nakata; Minoru Yoshida
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-05       Impact factor: 6.237

5.  A small-molecule inhibitor shows that pirin regulates migration of melanoma cells.

Authors:  Isao Miyazaki; Siro Simizu; Hideo Okumura; Satoshi Takagi; Hiroyuki Osada
Journal:  Nat Chem Biol       Date:  2010-08-15       Impact factor: 15.040

6.  Establishment of a high-throughput detection system for DNA demethylating agents.

Authors:  Eriko Okochi-Takada; Naoko Hattori; Akihiro Ito; Tohru Niwa; Mika Wakabayashi; Kana Kimura; Minoru Yoshida; Toshikazu Ushijima
Journal:  Epigenetics       Date:  2018-03-05       Impact factor: 4.528

Review 7.  Discovery and applications of nucleoside antibiotics beyond polyoxin.

Authors:  Hiroyuki Osada
Journal:  J Antibiot (Tokyo)       Date:  2019-09-25       Impact factor: 2.649

8.  Proteomic profiling reveals that collismycin A is an iron chelator.

Authors:  Makoto Kawatani; Makoto Muroi; Akira Wada; Gyo Inoue; Yushi Futamura; Harumi Aono; Kenshirou Shimizu; Takeshi Shimizu; Yasuhiro Igarashi; Naoko Takahashi-Ando; Hiroyuki Osada
Journal:  Sci Rep       Date:  2016-12-06       Impact factor: 4.379

9.  Sulfonamides identified as plant immune-priming compounds in high-throughput chemical screening increase disease resistance in Arabidopsis thaliana.

Authors:  Yoshiteru Noutoshi; Mika Ikeda; Tamio Saito; Hiroyuki Osada; Ken Shirasu
Journal:  Front Plant Sci       Date:  2012-10-31       Impact factor: 5.753

10.  Proteomic profiling of small-molecule inhibitors reveals dispensability of MTH1 for cancer cell survival.

Authors:  Tatsuro Kawamura; Makoto Kawatani; Makoto Muroi; Yasumitsu Kondoh; Yushi Futamura; Harumi Aono; Miho Tanaka; Kaori Honda; Hiroyuki Osada
Journal:  Sci Rep       Date:  2016-05-23       Impact factor: 4.379

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