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Literature DB >> 20525600

Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes.

L Lacey Knowles¹.

Abstract

Mesh：

Year: 2009 PMID： 20525600 DOI： 10.1093/sysbio/syp061

Source DB: PubMed Journal: Syst Biol ISSN： 1063-5157 Impact factor: 15.683

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27 in total

1. A Robust ANOVA Approach to Estimating a Phylogeny from Multiple Genes.

Authors: Ximing Xu; Katherine A Dunn; Chris Field
Journal: Mol Biol Evol Date: 2015-04-03 Impact factor: 16.240

2. Species detection and individual assignment in species delimitation: can integrative data increase efficacy?

Authors: Danielle L Edwards; L Lacey Knowles
Journal: Proc Biol Sci Date: 2014-01-08 Impact factor: 5.349

3. Reticulation, divergence, and the phylogeography-phylogenetics continuum.

Authors: Scott V Edwards; Sally Potter; C Jonathan Schmitt; Jason G Bragg; Craig Moritz
Journal: Proc Natl Acad Sci U S A Date: 2016-07-19 Impact factor: 11.205

4. Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis.

Authors: John E McCormack; Brant C Faircloth; Nicholas G Crawford; Patricia Adair Gowaty; Robb T Brumfield; Travis C Glenn
Journal: Genome Res Date: 2011-12-29 Impact factor: 9.043

10. Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions.

Authors: Steven D Leavitt; Theodore L Esslinger; Pradeep K Divakar; H Thorsten Lumbsch
Journal: BMC Evol Biol Date: 2012-09-11 Impact factor: 3.260

Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes.

1. A Robust ANOVA Approach to Estimating a Phylogeny from Multiple Genes.

2. Species detection and individual assignment in species delimitation: can integrative data increase efficacy?

3. Reticulation, divergence, and the phylogeography-phylogenetics continuum.

4. Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis.

5. Consensus properties for the deep coalescence problem and their application for scalable tree search.

6. Phylogenomics with incomplete taxon coverage: the limits to inference.

7. Detecting phylogenetic breakpoints and discordance from genome-wide alignments for species tree reconstruction.

8. Positive selection drives the evolution of a primate bitter taste receptor gene.

9. Bayesian inference of species trees from multilocus data.

10. Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions.