Literature DB >> 20516602

Crystallization of a 45 kDa peroxygenase/peroxidase from the mushroom Agrocybe aegerita and structure determination by SAD utilizing only the haem iron.

Klaus Piontek1, René Ullrich, Christiane Liers, Kay Diederichs, Dietmar A Plattner, Martin Hofrichter.   

Abstract

Some litter-decaying fungi secrete haem-thiolate peroxygenases that oxidize numerous organic compounds and therefore have a high potential for applications such as the detoxification of recalcitrant organic waste and chemical synthesis. Like P450 enzymes, they transfer oxygen functionalities to aromatic and aliphatic substrates. However, in contrast to this class of enzymes, they only require H(2)O(2) for activity. Furthermore, they exhibit halogenation activity, as in the well characterized fungal chloroperoxidase, and display ether-cleavage activity. The major form of a highly glycosylated peroxygenase was produced from Agrocybe aegerita culture media, purified to apparent SDS homogeneity and crystallized under three different pH conditions. One crystal form containing two molecules per asymmetric unit was solved at 2.2 A resolution by SAD using the anomalous signal of the haem iron. Subsequently, two other crystal forms with four molecules per asymmetric unit were determined at 2.3 and 2.6 A resolution by molecular replacement.

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Year:  2010        PMID: 20516602      PMCID: PMC2882772          DOI: 10.1107/S1744309110013515

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  29 in total

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Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

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Authors:  René Ullrich; Martin Hofrichter
Journal:  Cell Mol Life Sci       Date:  2007-02       Impact factor: 9.261

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4.  Hydroxylation of naphthalene by aromatic peroxygenase from Agrocybe aegerita proceeds via oxygen transfer from H2O2 and intermediary epoxidation.

Authors:  Martin Kluge; René Ullrich; Christoph Dolge; Katrin Scheibner; Martin Hofrichter
Journal:  Appl Microbiol Biotechnol       Date:  2008-09-25       Impact factor: 4.813

5.  Novel haloperoxidase from the agaric basidiomycete Agrocybe aegerita oxidizes aryl alcohols and aldehydes.

Authors:  René Ullrich; Jörg Nüske; Katrin Scheibner; Jörg Spantzel; Martin Hofrichter
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

6.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

7.  Conversion of dibenzothiophene by the mushrooms Agrocybe aegerita and Coprinellus radians and their extracellular peroxygenases.

Authors:  Elizabet Aranda; Matthias Kinne; Martin Kluge; René Ullrich; Martin Hofrichter
Journal:  Appl Microbiol Biotechnol       Date:  2008-11-28       Impact factor: 4.813

8.  Purification of homogeneous forms of fungal peroxygenase.

Authors:  René Ullrich; Christiane Liers; Sylvia Schimpke; Martin Hofrichter
Journal:  Biotechnol J       Date:  2009-11       Impact factor: 4.677

9.  The coprophilous mushroom Coprinus radians secretes a haloperoxidase that catalyzes aromatic peroxygenation.

Authors:  Dau Hung Anh; René Ullrich; Dirk Benndorf; Ales Svatos; Alexander Muck; Martin Hofrichter
Journal:  Appl Environ Microbiol       Date:  2007-06-29       Impact factor: 4.792

10.  The Buccaneer software for automated model building. 1. Tracing protein chains.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-08-19
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  14 in total

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2.  Selective hydroxylation of alkanes by an extracellular fungal peroxygenase.

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Review 3.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

4.  Detection and kinetic characterization of a highly reactive heme-thiolate peroxygenase compound I.

Authors:  Xiaoshi Wang; Sebastian Peter; Matthias Kinne; Martin Hofrichter; John T Groves
Journal:  J Am Chem Soc       Date:  2012-07-26       Impact factor: 15.419

5.  A Biocatalytic Platform for the Synthesis of Enantiopure Propargylic Alcohols and Amines.

Authors:  Xianke Sang; Feifei Tong; Zhigang Zeng; Minghu Wu; Bo Yuan; Zhoutong Sun; Xiang Sheng; Ge Qu; Miguel Alcalde; Frank Hollmann; Wuyuan Zhang
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Review 6.  Halogenation in Fungi: What Do We Know and What Remains to Be Discovered?

Authors:  Bastien Cochereau; Laurence Meslet-Cladière; Yves François Pouchus; Olivier Grovel; Catherine Roullier
Journal:  Molecules       Date:  2022-05-14       Impact factor: 4.927

Review 7.  Identification and Expression of New Unspecific Peroxygenases - Recent Advances, Challenges and Opportunities.

Authors:  Alina Kinner; Katrin Rosenthal; Stephan Lütz
Journal:  Front Bioeng Biotechnol       Date:  2021-07-07

8.  Transcriptome and proteome exploration to provide a resource for the study of Agrocybe aegerita.

Authors:  Man Wang; Bianli Gu; Jie Huang; Shuai Jiang; Yijie Chen; Yalin Yin; Yongfu Pan; Guojun Yu; Yamu Li; Barry Hon Cheung Wong; Yi Liang; Hui Sun
Journal:  PLoS One       Date:  2013-02-13       Impact factor: 3.240

Review 9.  Lignin degradation: microorganisms, enzymes involved, genomes analysis and evolution.

Authors:  Grzegorz Janusz; Anna Pawlik; Justyna Sulej; Urszula Swiderska-Burek; Anna Jarosz-Wilkolazka; Andrzej Paszczynski
Journal:  FEMS Microbiol Rev       Date:  2017-11-01       Impact factor: 16.408

10.  Benzene oxygenation and oxidation by the peroxygenase of Agrocybe aegerita.

Authors:  Alexander Karich; Martin Kluge; René Ullrich; Martin Hofrichter
Journal:  AMB Express       Date:  2013-01-17       Impact factor: 3.298

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