Literature DB >> 2051479

Can one measure the free energy of binding of the histone octamer to different DNA sequences by salt-dependent reconstitution?

H R Drew1.   

Abstract

I explain why many recently reported measurements for the "free energy" of positioning of the histone octamer on different DNA sequences are likely to be in error: i.e. because histone octamers do not equilibrate between different DNA molecules at low salt, but only at high salt. Thus, the reported "free energies" refer to an equilibrium at high salt, under nearly dissociating conditions between protein and DNA, and they are likely to be much too small on an absolute scale. There are many other lines of evidence to suggest that the preferences of the histone octamer for different DNA sequences are rather strong and of importance in biological systems.

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Year:  1991        PMID: 2051479     DOI: 10.1016/0022-2836(91)90179-a

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  10 in total

1.  Dynamic properties of nucleosomes during thermal and ATP-driven mobilization.

Authors:  Andrew Flaus; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

2.  Wrapping of genomic polydA.polydT tracts around nucleosome core particles.

Authors:  K R Fox
Journal:  Nucleic Acids Res       Date:  1992-03-25       Impact factor: 16.971

3.  Eukaryotic DNA does not form nucleosomes as readily as some prokaryotic DNA.

Authors:  R C Getts; M J Behe
Journal:  Nucleic Acids Res       Date:  1991-11-11       Impact factor: 16.971

4.  Unique translational positioning of nucleosomes on synthetic DNAs.

Authors:  D J Fitzgerald; J N Anderson
Journal:  Nucleic Acids Res       Date:  1998-06-01       Impact factor: 16.971

5.  GAL4 directs nucleosome sliding induced by NURF.

Authors:  Ju-Gyeong Kang; Ali Hamiche; Carl Wu
Journal:  EMBO J       Date:  2002-03-15       Impact factor: 11.598

6.  Modified curved DNA that could allow local DNA underwinding at the nucleosomal pseudodyad fails to position a nucleosome in vivo.

Authors:  H G Patterton; R T Simpson
Journal:  Nucleic Acids Res       Date:  1995-10-25       Impact factor: 16.971

7.  Periodicity of strong nucleosome positioning sites around the chicken adult beta-globin gene may encode regularly spaced chromatin.

Authors:  C Davey; S Pennings; G Meersseman; T J Wess; J Allan
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

8.  Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes.

Authors:  Chris Stockdale; Andrew Flaus; Helder Ferreira; Tom Owen-Hughes
Journal:  J Biol Chem       Date:  2006-04-10       Impact factor: 5.157

9.  Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals.

Authors:  A Flaus; K Luger; S Tan; T J Richmond
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-20       Impact factor: 11.205

10.  DNA-histone interactions are sufficient to position a single nucleosome juxtaposing Drosophila Adh adult enhancer and distal promoter.

Authors:  J R Jackson; C Benyajati
Journal:  Nucleic Acids Res       Date:  1993-02-25       Impact factor: 16.971

  10 in total

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