Literature DB >> 20514129

How are nucleosomes disrupted during transcription elongation?

Jordanka Zlatanova, Jean-Marc Victor.   

Abstract

Chromatin structure is a powerful tool to regulate eukaryotic transcription. Moreover, nucleosomes are constantly remodeled, disassembled, and reassembled in the body of transcribed genes. Here we propose a general model that explains, in quantitative terms, how transcription elongation affects nucleosome structure at a distance as a result of the positive torque the polymerases create as they translocate along DNA templates.

Year:  2009        PMID: 20514129      PMCID: PMC2839809          DOI: 10.2976/1.3249971

Source DB:  PubMed          Journal:  HFSP J        ISSN: 1955-205X


  19 in total

1.  Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila.

Authors:  Kuniharu Matsumoto; Susumu Hirose
Journal:  J Cell Sci       Date:  2004-07-13       Impact factor: 5.285

2.  NAD+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1.

Authors:  Mi Young Kim; Steven Mauro; Nicolas Gévry; John T Lis; W Lee Kraus
Journal:  Cell       Date:  2004-12-17       Impact factor: 41.582

3.  Structural plasticity of single chromatin fibers revealed by torsional manipulation.

Authors:  Aurélien Bancaud; Natalia Conde e Silva; Maria Barbi; Gaudeline Wagner; Jean-François Allemand; Julien Mozziconacci; Christophe Lavelle; Vincent Croquette; Jean-Marc Victor; Ariel Prunell; Jean-Louis Viovy
Journal:  Nat Struct Mol Biol       Date:  2006-04-16       Impact factor: 15.369

Review 4.  The nucleosome family: dynamic and growing.

Authors:  Jordanka Zlatanova; Thomas C Bishop; Jean-Marc Victor; Vaughn Jackson; Ken van Holde
Journal:  Structure       Date:  2009-02-13       Impact factor: 5.006

5.  Sodium salicylate decreases intracellular ATP, induces both heat shock factor binding and chromosomal puffing, but does not induce hsp 70 gene transcription in Drosophila.

Authors:  N A Winegarden; K S Wong; M Sopta; J T Westwood
Journal:  J Biol Chem       Date:  1996-10-25       Impact factor: 5.157

Review 6.  The linker-protein network: control of nucleosomal DNA accessibility.

Authors:  Jordanka Zlatanova; Corrine Seebart; Miroslav Tomschik
Journal:  Trends Biochem Sci       Date:  2008-05-28       Impact factor: 13.807

Review 7.  Promoter-proximal Pol II: when stalling speeds things up.

Authors:  Sergei Nechaev; Karen Adelman
Journal:  Cell Cycle       Date:  2008-03-27       Impact factor: 4.534

8.  DRB-induced premature termination of late adenovirus transcription.

Authors:  N W Fraser; P B Sehgal; J E Darnell
Journal:  Nature       Date:  1978-04-13       Impact factor: 49.962

9.  The functional response of upstream DNA to dynamic supercoiling in vivo.

Authors:  Fedor Kouzine; Suzanne Sanford; Zichrini Elisha-Feil; David Levens
Journal:  Nat Struct Mol Biol       Date:  2008-01-13       Impact factor: 15.369

10.  Reciprocal binding of PARP-1 and histone H1 at promoters specifies transcriptional outcomes.

Authors:  Raga Krishnakumar; Matthew J Gamble; Kristine M Frizzell; Jhoanna G Berrocal; Miltiadis Kininis; W Lee Kraus
Journal:  Science       Date:  2008-02-08       Impact factor: 47.728

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  8 in total

1.  On the topology of chromatin fibres.

Authors:  Maria Barbi; Julien Mozziconacci; Jean-Marc Victor; Hua Wong; Christophe Lavelle
Journal:  Interface Focus       Date:  2012-02-01       Impact factor: 3.906

2.  DNA topology in chromosomes: a quantitative survey and its physiological implications.

Authors:  Maria Barbi; Julien Mozziconacci; Hua Wong; Jean-Marc Victor
Journal:  J Math Biol       Date:  2012-11-20       Impact factor: 2.259

3.  Heat shock reduces stalled RNA polymerase II and nucleosome turnover genome-wide.

Authors:  Sheila S Teves; Steven Henikoff
Journal:  Genes Dev       Date:  2011-11-15       Impact factor: 11.361

Review 4.  The importance of being supercoiled: how DNA mechanics regulate dynamic processes.

Authors:  Laura Baranello; David Levens; Ashutosh Gupta; Fedor Kouzine
Journal:  Biochim Biophys Acta       Date:  2012-01-03

5.  Doxorubicin enhances nucleosome turnover around promoters.

Authors:  Fan Yang; Christopher J Kemp; Steven Henikoff
Journal:  Curr Biol       Date:  2013-04-18       Impact factor: 10.834

6.  DNA supercoiling during transcription.

Authors:  Jie Ma; Michelle D Wang
Journal:  Biophys Rev       Date:  2016-07-13

7.  Transcription-dependent dynamic supercoiling is a short-range genomic force.

Authors:  Fedor Kouzine; Ashutosh Gupta; Laura Baranello; Damian Wojtowicz; Khadija Ben-Aissa; Juhong Liu; Teresa M Przytycka; David Levens
Journal:  Nat Struct Mol Biol       Date:  2013-02-17       Impact factor: 15.369

8.  Topological diversity of chromatin fibers: Interplay between nucleosome repeat length, DNA linking number and the level of transcription.

Authors:  Davood Norouzi; Ataur Katebi; Feng Cui; Victor B Zhurkin
Journal:  AIMS Biophys       Date:  2015-11-03
  8 in total

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