Literature DB >> 20506535

DE-loop mutations affect beta2 microglobulin stability, oligomerization, and the low-pH unfolded form.

Carlo Santambrogio1, Stefano Ricagno, Matteo Colombo, Alberto Barbiroli, Francesco Bonomi, Vittorio Bellotti, Martino Bolognesi, Rita Grandori.   

Abstract

Beta2 microglobulin (beta2m) is the light chain of class-I major histocompatibility complex (MHC-I). Its accumulation in the blood of patients affected by kidney failure leads to amyloid deposition around skeletal joints and bones, a severe condition known as Dialysis Related Amyloidosis (DRA). In an effort to dissect the structural determinants of beta2m aggregation, several beta2m mutants have been previously studied. Among these, three single-residue mutations in the loop connecting strands D and E (W60G, W60V, D59P) have been shown to affect beta2m amyloidogenic properties, and are here considered. To investigate the biochemical and biophysical properties of wild-type (w.t.) beta2m and the three mutants, we explored thermal unfolding by Trp fluorescence and circular dichroism (CD). The W60G mutant reveals a pronounced increase in conformational stability. Protein oligomerization and reduction kinetics were investigated by electrospray-ionization mass spectrometry (ESI-MS). All the mutations analyzed here reduce the protein propensity to form soluble oligomers, suggesting a role for the DE-loop in intermolecular interactions. A partially folded intermediate, which may be involved in protein aggregation induced by acids, accumulates for all the tested proteins at pH 2.5 under oxidizing conditions. Moreover, the kinetics of disulfide reduction reveals specific differences among the tested mutants. Thus, beta2m DE-loop mutations display long-range effects, affecting stability and structural properties of the native protein and its low-pH intermediate. The evidence presented here hints to a crucial role played by the DE-loop in determining the overall properties of native and partially folded beta2m.

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Year:  2010        PMID: 20506535      PMCID: PMC2974830          DOI: 10.1002/pro.419

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  35 in total

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Authors:  M Okon; P Bray; D Vucelić
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

2.  Estimates of protein surface areas in solution by electrospray ionization mass spectrometry.

Authors:  Igor A Kaltashov; Anirban Mohimen
Journal:  Anal Chem       Date:  2005-08-15       Impact factor: 6.986

3.  Nuclear magnetic resonance characterization of the refolding intermediate of beta2-microglobulin trapped by non-native prolyl peptide bond.

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Journal:  J Mol Biol       Date:  2005-04-29       Impact factor: 5.469

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Authors:  J Floege; G Ehlerding
Journal:  Nephron       Date:  1996       Impact factor: 2.847

5.  A new form of amyloid protein associated with chronic hemodialysis was identified as beta 2-microglobulin.

Authors:  F Gejyo; T Yamada; S Odani; Y Nakagawa; M Arakawa; T Kunitomo; H Kataoka; M Suzuki; Y Hirasawa; T Shirahama
Journal:  Biochem Biophys Res Commun       Date:  1985-06-28       Impact factor: 3.575

6.  A single disulfide bond differentiates aggregation pathways of beta2-microglobulin.

Authors:  Yiwen Chen; Nikolay V Dokholyan
Journal:  J Mol Biol       Date:  2005-10-07       Impact factor: 5.469

7.  Conformation of beta 2-microglobulin amyloid fibrils analyzed by reduction of the disulfide bond.

Authors:  Dong-Pyo Hong; Masayo Gozu; Kazuhiro Hasegawa; Hironobu Naiki; Yuji Goto
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8.  Formation of a copper specific binding site in non-native states of beta-2-microglobulin.

Authors:  Catherine M Eakin; Jefferson D Knight; Charles J Morgan; Michael A Gelfand; Andrew D Miranker
Journal:  Biochemistry       Date:  2002-08-27       Impact factor: 3.162

9.  Dynamics in the unfolded state of beta2-microglobulin studied by NMR.

Authors:  Geoffrey W Platt; Victoria J McParland; Arnout P Kalverda; Steve W Homans; Sheena E Radford
Journal:  J Mol Biol       Date:  2004-12-22       Impact factor: 5.469

10.  Co-populated conformational ensembles of beta2-microglobulin uncovered quantitatively by electrospray ionization mass spectrometry.

Authors:  Antoni J H Borysik; Sheena E Radford; Alison E Ashcroft
Journal:  J Biol Chem       Date:  2004-04-20       Impact factor: 5.157

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  18 in total

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Journal:  Biophys J       Date:  2020-07-24       Impact factor: 4.033

2.  Structure, stability, and aggregation of β-2 microglobulin mutants: insights from a Fourier transform infrared study in solution and in the crystalline state.

Authors:  Diletta Ami; Stefano Ricagno; Martino Bolognesi; Vittorio Bellotti; Silvia Maria Doglia; Antonino Natalello
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3.  Insights into the effects of N-glycosylation on the characteristics of the VC1 domain of the human receptor for advanced glycation end products (RAGE) secreted by Pichia pastoris.

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4.  Increased β-Sheet Dynamics and D-E Loop Repositioning Are Necessary for Cu(II)-Induced Amyloid Formation by β-2-Microglobulin.

Authors:  Nicholas B Borotto; Zhe Zhang; Jia Dong; Brittney Burant; Richard W Vachet
Journal:  Biochemistry       Date:  2017-02-16       Impact factor: 3.162

5.  Stepwise unfolding of human β2-microglobulin into a disordered amyloidogenic precursor at low pH.

Authors:  Dominic Narang; Anubhuti Singh; Samrat Mukhopadhyay
Journal:  Eur Biophys J       Date:  2016-05-25       Impact factor: 1.733

Review 6.  Understanding the complex mechanisms of β2-microglobulin amyloid assembly.

Authors:  Timo Eichner; Sheena E Radford
Journal:  FEBS J       Date:  2011-06-13       Impact factor: 5.542

7.  Wild type beta-2 microglobulin and DE loop mutants display a common fibrillar architecture.

Authors:  Antonino Natalello; Annalisa Relini; Amanda Penco; Levon Halabelian; Martino Bolognesi; Silvia Maria Doglia; Stefano Ricagno
Journal:  PLoS One       Date:  2015-03-24       Impact factor: 3.240

8.  A covalent homodimer probing early oligomers along amyloid aggregation.

Authors:  Levon Halabelian; Annalisa Relini; Alberto Barbiroli; Amanda Penco; Martino Bolognesi; Stefano Ricagno
Journal:  Sci Rep       Date:  2015-09-30       Impact factor: 4.379

9.  Platelet-derived β2M regulates monocyte inflammatory responses.

Authors:  Zachary T Hilt; Daphne N Pariser; Sara K Ture; Amy Mohan; Pearl Quijada; Akua A Asante; Scott J Cameron; Julie A Sterling; Alyssa R Merkel; Andrew L Johanson; Jermaine L Jenkins; Eric M Small; Kathleen E McGrath; James Palis; Michael R Elliott; Craig N Morrell
Journal:  JCI Insight       Date:  2019-03-07

10.  Assessing the effect of loop mutations in the folding space of β2-microglobulin with molecular dynamics simulations.

Authors:  Sílvia G Estácio; Eugene I Shakhnovich; Patrícia F N Faísca
Journal:  Int J Mol Sci       Date:  2013-08-22       Impact factor: 5.923

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