Literature DB >> 20505228

A particle-based model to simulate the micromechanics of single-plant parenchyma cells and aggregates.

P Van Liedekerke1, P Ghysels, E Tijskens, G Samaey, B Smeedts, D Roose, H Ramon.   

Abstract

This paper is concerned with addressing how plant tissue mechanics is related to the micromechanics of cells. To this end, we propose a mesh-free particle method to simulate the mechanics of both individual plant cells (parenchyma) and cell aggregates in response to external stresses. The model considers two important features in the plant cell: (1) the cell protoplasm, the interior liquid phase inducing hydrodynamic phenomena, and (2) the cell wall material, a viscoelastic solid material that contains the protoplasm. In this particle framework, the cell fluid is modeled by smoothed particle hydrodynamics (SPH), a mesh-free method typically used to address problems with gas and fluid dynamics. In the solid phase (cell wall) on the other hand, the particles are connected by pairwise interactions holding them together and preventing the fluid to penetrate the cell wall. The cell wall hydraulic conductivity (permeability) is built in as well through the SPH formulation. Although this model is also meant to be able to deal with dynamic and even violent situations (leading to cell wall rupture or cell-cell debonding), we have concentrated on quasi-static conditions. The results of single-cell compression simulations show that the conclusions found by analytical models and experiments can be reproduced at least qualitatively. Relaxation tests revealed that plant cells have short relaxation times (1 micros-10 micros) compared to mammalian cells. Simulations performed on cell aggregates indicated an influence of the cellular organization to the tissue response, as was also observed in experiments done on tissues with a similar structure.

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Year:  2010        PMID: 20505228     DOI: 10.1088/1478-3975/7/2/026006

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  5 in total

Review 1.  Multiscale models in the biomechanics of plant growth.

Authors:  Oliver E Jensen; John A Fozard
Journal:  Physiology (Bethesda)       Date:  2015-03

2.  The architecture of Norway spruce ectomycorrhizae: three-dimensional models of cortical cells, fungal biomass, and interface for potential nutrient exchange.

Authors:  Bernhard Stögmann; Andreas Marth; Barbara Pernfuß; Reinhold Pöder
Journal:  Mycorrhiza       Date:  2013-02-23       Impact factor: 3.387

3.  Computational morphodynamics of plants: integrating development over space and time.

Authors:  Adrienne H K Roeder; Paul T Tarr; Cory Tobin; Xiaolan Zhang; Vijay Chickarmane; Alexandre Cunha; Elliot M Meyerowitz
Journal:  Nat Rev Mol Cell Biol       Date:  2011-03-02       Impact factor: 94.444

4.  An arbitrary Lagrangian Eulerian smoothed particle hydrodynamics (ALE-SPH) method with a boundary volume fraction formulation for fluid-structure interaction.

Authors:  Bruno Jacob; Brian Drawert; Tau-Mu Yi; Linda Petzold
Journal:  Eng Anal Bound Elem       Date:  2021-04-22       Impact factor: 3.250

5.  Quantitative cell-based model predicts mechanical stress response of growing tumor spheroids over various growth conditions and cell lines.

Authors:  Paul Van Liedekerke; Johannes Neitsch; Tim Johann; Kevin Alessandri; Pierre Nassoy; Dirk Drasdo
Journal:  PLoS Comput Biol       Date:  2019-03-08       Impact factor: 4.475

  5 in total

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