Literature DB >> 20504964

Planetary organic chemistry and the origins of biomolecules.

Steven A Benner1, Hyo-Joong Kim, Myung-Jung Kim, Alonso Ricardo.   

Abstract

Organic chemistry on a planetary scale is likely to have transformed carbon dioxide and reduced carbon species delivered to an accreting Earth. According to various models for the origin of life on Earth, biological molecules that jump-started Darwinian evolution arose via this planetary chemistry. The grandest of these models assumes that ribonucleic acid (RNA) arose prebiotically, together with components for compartments that held it and a primitive metabolism that nourished it. Unfortunately, it has been challenging to identify possible prebiotic chemistry that might have created RNA. Organic molecules, given energy, have a well-known propensity to form multiple products, sometimes referred to collectively as "tar" or "tholin." These mixtures appear to be unsuited to support Darwinian processes, and certainly have never been observed to spontaneously yield a homochiral genetic polymer. To date, proposed solutions to this challenge either involve too much direct human intervention to satisfy many in the community, or generate molecules that are unreactive "dead ends" under standard conditions of temperature and pressure. Carbohydrates, organic species having carbon, hydrogen, and oxygen atoms in a ratio of 1:2:1 and an aldehyde or ketone group, conspicuously embody this challenge. They are components of RNA and their reactivity can support both interesting spontaneous chemistry as part of a "carbohydrate world," but they also easily form mixtures, polymers and tars. We describe here the latest thoughts on how on this challenge, focusing on how it might be resolved using minerals containing borate, silicate, and molybdate, inter alia.

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Year:  2010        PMID: 20504964      PMCID: PMC2890202          DOI: 10.1101/cshperspect.a003467

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  22 in total

1.  Chemical etiology of nucleic acid structure: the alpha-threofuranosyl-(3'-->2') oligonucleotide system.

Authors:  K Schöning; P Scholz; S Guntha; X Wu; R Krishnamurthy; A Eschenmoser
Journal:  Science       Date:  2000-11-17       Impact factor: 47.728

2.  Racemic amino acids from the ultraviolet photolysis of interstellar ice analogues.

Authors:  Max P Bernstein; Jason P Dworkin; Scott A Sandford; George W Cooper; Louis J Allamandola
Journal:  Nature       Date:  2002-03-28       Impact factor: 49.962

3.  Desorption/ionization on porous silicon mass spectrometry studies on pentose-borate complexes.

Authors:  Qian Li; Alonso Ricardo; Steve A Benner; James D Winefordner; David H Powell
Journal:  Anal Chem       Date:  2005-07-15       Impact factor: 6.986

4.  Studies in prebiotic synthesis. II. Synthesis of purine precursors and amino acids from aqueous hydrogen cyanide.

Authors:  R A Sanchez; J P Ferris; L E Orgel
Journal:  J Mol Biol       Date:  1967-12-14       Impact factor: 5.469

5.  Carbonaceous meteorites as a source of sugar-related organic compounds for the early Earth.

Authors:  G Cooper; N Kimmich; W Belisle; J Sarinana; K Brabham; L Garrel
Journal:  Nature       Date:  2001 Dec 20-27       Impact factor: 49.962

6.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

7.  Silicate complexes of sugars in aqueous solution.

Authors:  Joseph B Lambert; Gang Lu; Stephanie R Singer; Vera M Kolb
Journal:  J Am Chem Soc       Date:  2004-08-11       Impact factor: 15.419

8.  Ultraviolet-photoproduced organic solids synthesized under simulated jovian conditions: molecular analysis.

Authors:  B N Khare; C Sagan; E L Bandurski; B Nagy
Journal:  Science       Date:  1978-03-17       Impact factor: 47.728

9.  Photochemical Production of Formaldehyde in Earth's Primitive Atmosphere.

Authors:  J P Pinto; G R Gladstone; Y L Yung
Journal:  Science       Date:  1980-10-10       Impact factor: 47.728

10.  Prebiotic ribose synthesis: a critical analysis.

Authors:  R Shapiro
Journal:  Orig Life Evol Biosph       Date:  1988       Impact factor: 1.950

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  19 in total

1.  Serpentinite and the dawn of life.

Authors:  Norman H Sleep; Dennis K Bird; Emily C Pope
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

2.  On dating stages in prebiotic chemical evolution.

Authors:  Robert P Bywater
Journal:  Naturwissenschaften       Date:  2012-02-15

Review 3.  The Hadean-Archaean environment.

Authors:  Norman H Sleep
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-05       Impact factor: 10.005

4.  Energy flows, metabolism and translation.

Authors:  Robert Pascal; Laurent Boiteau
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

5.  Refining the genetic alphabet: a late-period selection pressure?

Authors:  Andro C Rios; Yitzhak Tor
Journal:  Astrobiology       Date:  2012-09       Impact factor: 4.335

6.  On the Plausibility of Pseudosugar Formation in Cometary Ices and Oxygen-rich Tholins.

Authors:  Nieves Lavado; Martín Ávalos; Reyes Babiano; Pedro Cintas; Mark E Light; José Luis Jiménez; Juan C Palacios
Journal:  Orig Life Evol Biosph       Date:  2015-10-01       Impact factor: 1.950

Review 7.  Bioenergetics and life's origins.

Authors:  David Deamer; Arthur L Weber
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-02       Impact factor: 10.005

Review 8.  Is boron a prebiotic element? A mini-review of the essentiality of boron for the appearance of life on earth.

Authors:  Romulus Scorei
Journal:  Orig Life Evol Biosph       Date:  2012-04-17       Impact factor: 1.950

9.  Atmospheric production of glycolaldehyde under hazy prebiotic conditions.

Authors:  Chester E Harman; James F Kasting; Eric T Wolf
Journal:  Orig Life Evol Biosph       Date:  2013-05-22       Impact factor: 1.950

10.  Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network.

Authors:  Avinash Vicholous Dass; Thomas Georgelin; Frances Westall; Frédéric Foucher; Paolo De Los Rios; Daniel Maria Busiello; Shiling Liang; Francesco Piazza
Journal:  Nat Commun       Date:  2021-05-12       Impact factor: 14.919

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