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Literature DB >> 20493194

The RNA virus quasispecies: fact or fiction?

Edward C Holmes¹.

Abstract

Mesh：

Year: 2010 PMID： 20493194 DOI： 10.1016/j.jmb.2010.05.032

Source DB: PubMed Journal: J Mol Biol ISSN： 0022-2836 Impact factor: 5.469

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23 in total

1. QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.

Authors: Mattia C F Prosperi; Marco Salemi
Journal: Bioinformatics Date: 2011-11-15 Impact factor: 6.937

Review 2. Interplay between innate immunity and negative-strand RNA viruses: towards a rational model.

Authors: Denis Gerlier; Douglas S Lyles
Journal: Microbiol Mol Biol Rev Date: 2011-09 Impact factor: 11.056

3. Analysis of intrahost variation in Venezuelan equine encephalitis virus reveals repeated deletions in the 6-kilodalton protein gene.

Authors: N L Forrester; M Guerbois; A P Adams; X Liang; S C Weaver
Journal: J Virol Date: 2011-06-29 Impact factor: 5.103

4. Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus by using next-generation genome sequencing.

Authors: Caroline F Wright; Marco J Morelli; Gaël Thébaud; Nick J Knowles; Pawel Herzyk; David J Paton; Daniel T Haydon; Donald P King
Journal: J Virol Date: 2010-12-15 Impact factor: 5.103

Review 5. Hepatitis C virus molecular evolution: transmission, disease progression and antiviral therapy.

Authors: Maria Victoria Preciado; Pamela Valva; Alejandro Escobar-Gutierrez; Paula Rahal; Karina Ruiz-Tovar; Lilian Yamasaki; Carlos Vazquez-Chacon; Armando Martinez-Guarneros; Juan Carlos Carpio-Pedroza; Salvador Fonseca-Coronado; Mayra Cruz-Rivera
Journal: World J Gastroenterol Date: 2014-11-21 Impact factor: 5.742

The RNA virus quasispecies: fact or fiction?

1. QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.

Review 2. Interplay between innate immunity and negative-strand RNA viruses: towards a rational model.

3. Analysis of intrahost variation in Venezuelan equine encephalitis virus reveals repeated deletions in the 6-kilodalton protein gene.

4. Beyond the consensus: dissecting within-host viral population diversity of foot-and-mouth disease virus by using next-generation genome sequencing.

Review 5. Hepatitis C virus molecular evolution: transmission, disease progression and antiviral therapy.

6. Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus.

7. Evaluation of haplotype callers for next-generation sequencing of viruses.

8. Separation and assembly of deep sequencing data into discrete sub-population genomes.

9. "Boom" and "Bust" cycles in virus growth suggest multiple selective forces in influenza a evolution.

10. A proofreading-impaired herpesvirus generates populations with quasispecies-like structure.