Literature DB >> 20481793

Local resolution-limit-free Potts model for community detection.

Peter Ronhovde1, Zohar Nussinov.   

Abstract

We report on an exceptionally accurate spin-glass-type Potts model for community detection. With a simple algorithm, we find that our approach is at least as accurate as the best currently available algorithms and robust to the effects of noise. It is also competitive with the best currently available algorithms in terms of speed and size of solvable systems. We find that the computational demand often exhibits superlinear scaling O(L1.3) where L is the number of edges in the system, and we have applied the algorithm to synthetic systems as large as 40 x 10(6) nodes and over 1 x 10(9) edges. A previous stumbling block encountered by popular community detection methods is the so-called "resolution limit." Being a "local" measure of community structure, our Potts model is free from this resolution-limit effect, and it further remains a local measure on weighted and directed graphs. We also address the mitigation of resolution-limit effects for two other popular Potts models.

Entities:  

Year:  2010        PMID: 20481793     DOI: 10.1103/PhysRevE.81.046114

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  17 in total

1.  Detecting hidden spatial and spatio-temporal structures in glasses and complex physical systems by multiresolution network clustering.

Authors:  P Ronhovde; S Chakrabarty; D Hu; M Sahu; K K Sahu; K F Kelton; N A Mauro; Z Nussinov
Journal:  Eur Phys J E Soft Matter       Date:  2011-09-29       Impact factor: 1.890

2.  Link-Prediction Enhanced Consensus Clustering for Complex Networks.

Authors:  Matthew Burgess; Eytan Adar; Michael Cafarella
Journal:  PLoS One       Date:  2016-05-20       Impact factor: 3.240

3.  Exploring the landscape of model representations.

Authors:  Thomas T Foley; Katherine M Kidder; M Scott Shell; W G Noid
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-14       Impact factor: 11.205

Review 4.  How do dynamic cellular signals travel long distances?

Authors:  Ruth Nussinov
Journal:  Mol Biosyst       Date:  2011-07-18

5.  Automatic segmentation of fluorescence lifetime microscopy images of cells using multiresolution community detection--a first study.

Authors:  D Hu; P Sarder; P Ronhovde; S Orthaus; S Achilefu; Z Nussinov
Journal:  J Microsc       Date:  2013-11-19       Impact factor: 1.758

6.  Surprise maximization reveals the community structure of complex networks.

Authors:  Rodrigo Aldecoa; Ignacio Marín
Journal:  Sci Rep       Date:  2013-01-14       Impact factor: 4.379

7.  Detection of hidden structures for arbitrary scales in complex physical systems.

Authors:  P Ronhovde; S Chakrabarty; D Hu; M Sahu; K K Sahu; K F Kelton; N A Mauro; Z Nussinov
Journal:  Sci Rep       Date:  2012-03-29       Impact factor: 4.379

8.  Exploring the limits of community detection strategies in complex networks.

Authors:  Rodrigo Aldecoa; Ignacio Marín
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

9.  Detecting Community Structure by Using a Constrained Label Propagation Algorithm.

Authors:  Jia Hou Chin; Kuru Ratnavelu
Journal:  PLoS One       Date:  2016-05-13       Impact factor: 3.240

10.  Cell Assembly Dynamics of Sparsely-Connected Inhibitory Networks: A Simple Model for the Collective Activity of Striatal Projection Neurons.

Authors:  David Angulo-Garcia; Joshua D Berke; Alessandro Torcini
Journal:  PLoS Comput Biol       Date:  2016-02-25       Impact factor: 4.475

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