Literature DB >> 20481745

Sucking genes into pores: insight into driven translocation.

Takahiro Sakaue1.   

Abstract

Flexible polymers such as long DNA, RNA molecules, and proteins, can pass through a narrow pore whose size is comparable to their molecular thickness. We highlight the richness and complexity involved in the dynamics of this unique mode of molecular transport, called translocation, actively driven by external forces. In particular, the process takes place in the condition far from equilibrium accompanying of large conformational distortion in line with the propagation of the tensile force along the chain backbone. A general framework is proposed, which captures such essential features, whereby can account for reported various experimental data from a unified viewpoint.

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Year:  2010        PMID: 20481745     DOI: 10.1103/PhysRevE.81.041808

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  6 in total

1.  Origins and consequences of velocity fluctuations during DNA passage through a nanopore.

Authors:  Bo Lu; Fernando Albertorio; David P Hoogerheide; Jene A Golovchenko
Journal:  Biophys J       Date:  2011-07-06       Impact factor: 4.033

2.  Dynamical diagram and scaling in polymer driven translocation.

Authors:  T Saito; T Sakaue
Journal:  Eur Phys J E Soft Matter       Date:  2011-12-28       Impact factor: 1.890

3.  Bandpass filtering of DNA elastic modes using confinement and tension.

Authors:  Jun Lin; Fredrik Persson; Joachim Fritzsche; Jonas O Tegenfeldt; Omar A Saleh
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

4.  Role of non-equilibrium conformations on driven polymer translocation.

Authors:  H H Katkar; M Muthukumar
Journal:  J Chem Phys       Date:  2018-01-14       Impact factor: 3.488

5.  Driven translocation of a semi-flexible polymer through a nanopore.

Authors:  Jalal Sarabadani; Timo Ikonen; Harri Mökkönen; Tapio Ala-Nissila; Spencer Carson; Meni Wanunu
Journal:  Sci Rep       Date:  2017-08-07       Impact factor: 4.379

6.  Asymmetric dynamics of DNA entering and exiting a strongly confining nanopore.

Authors:  Nicholas A W Bell; Kaikai Chen; Sandip Ghosal; Maria Ricci; Ulrich F Keyser
Journal:  Nat Commun       Date:  2017-08-30       Impact factor: 14.919

  6 in total

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