Literature DB >> 20462379

Chromatin dynamics.

Michael R Hübner1, David L Spector.   

Abstract

The expression patterns of many protein-coding genes are orchestrated in response to exogenous stimuli, as well as cell-type-specific developmental programs. In recent years, researchers have shown that dynamic chromatin movements and interactions in the nucleus play a crucial role in gene regulation. In this review, we highlight our current understanding of the organization of chromatin in the interphase nucleus and the impact of chromatin dynamics on gene expression. We also discuss the current state of knowledge with regard to the localization of active and inactive genes within the three-dimensional nuclear space. Furthermore, we address recent findings that demonstrate the movements of chromosomal regions and genomic loci in association with changes in transcriptional activity. Finally, we discuss the role of intra- and interchromosomal interactions in the control of coregulated genes.

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Year:  2010        PMID: 20462379      PMCID: PMC2894465          DOI: 10.1146/annurev.biophys.093008.131348

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  131 in total

1.  Global nature of dynamic protein-chromatin interactions in vivo: three-dimensional genome scanning and dynamic interaction networks of chromatin proteins.

Authors:  Robert D Phair; Paola Scaffidi; Cem Elbi; Jaromíra Vecerová; Anup Dey; Keiko Ozato; David T Brown; Gordon Hager; Michael Bustin; Tom Misteli
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

2.  Laser UV microirradiation of interphase nuclei and post-treatment with caffeine. A new approach to establish the arrangement of interphase chromosomes.

Authors:  C Zorn; T Cremer; C Cremer; J Zimmer
Journal:  Hum Genet       Date:  1976-12-29       Impact factor: 4.132

3.  Chromosome rotation and formation of synapsis.

Authors:  M Parvinen; K O Söderström
Journal:  Nature       Date:  1976-04-08       Impact factor: 49.962

4.  Chromosome spatial order in human cells: evidence for early origin and faithful propagation.

Authors:  R G Nagele; T Freeman; J Fazekas; K M Lee; Z Thomson; H Y Lee
Journal:  Chromosoma       Date:  1998-11       Impact factor: 4.316

5.  Dynamic light scattering studies of internal motions in DNA. II. Clean viral DNAs.

Authors:  J C Thomas; S A Allison; J M Schurr; R D Holder
Journal:  Biopolymers       Date:  1980-08       Impact factor: 2.505

6.  Structure and dynamics of human interphase chromosome territories in vivo.

Authors:  D Zink; T Cremer; R Saffrich; R Fischer; M F Trendelenburg; W Ansorge; E H Stelzer
Journal:  Hum Genet       Date:  1998-02       Impact factor: 4.132

7.  Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops.

Authors:  Adele Murrell; Sarah Heeson; Wolf Reik
Journal:  Nat Genet       Date:  2004-07-25       Impact factor: 38.330

8.  Large-scale chromosomal movements during interphase progression in Drosophila.

Authors:  A K Csink; S Henikoff
Journal:  J Cell Biol       Date:  1998-10-05       Impact factor: 10.539

9.  Active genes dynamically colocalize to shared sites of ongoing transcription.

Authors:  Cameron S Osborne; Lyubomira Chakalova; Karen E Brown; David Carter; Alice Horton; Emmanuel Debrand; Beatriz Goyenechea; Jennifer A Mitchell; Susana Lopes; Wolf Reik; Peter Fraser
Journal:  Nat Genet       Date:  2004-09-07       Impact factor: 38.330

10.  Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nuclei.

Authors:  Daniele Zink; Margarida D Amaral; Andreas Englmann; Susanne Lang; Luka A Clarke; Carsten Rudolph; Felix Alt; Kathrin Luther; Carla Braz; Nicolas Sadoni; Joseph Rosenecker; Dirk Schindelhauer
Journal:  J Cell Biol       Date:  2004-09-13       Impact factor: 10.539

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  77 in total

1.  The fractal globule as a model of chromatin architecture in the cell.

Authors:  Leonid A Mirny
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

Review 2.  Dicing bodies.

Authors:  Qi Liu; Leilei Shi; Yuda Fang
Journal:  Plant Physiol       Date:  2011-10-24       Impact factor: 8.340

3.  Transcription regulates telomere dynamics in human cancer cells.

Authors:  Rajika Arora; Catherine M Brun; Claus M Azzalin
Journal:  RNA       Date:  2012-02-22       Impact factor: 4.942

4.  Malat1 is not an essential component of nuclear speckles in mice.

Authors:  Shinichi Nakagawa; Joanna Y Ip; Go Shioi; Vidisha Tripathi; Xinying Zong; Tetsuro Hirose; Kannanganattu V Prasanth
Journal:  RNA       Date:  2012-06-20       Impact factor: 4.942

Review 5.  Something silent this way forms: the functional organization of the repressive nuclear compartment.

Authors:  Joan C Ritland Politz; David Scalzo; Mark Groudine
Journal:  Annu Rev Cell Dev Biol       Date:  2013-07-05       Impact factor: 13.827

Review 6.  Biological implications and regulatory mechanisms of long-range chromosomal interactions.

Authors:  Zong Wei; David Huang; Fan Gao; Wen-Hsuan Chang; Woojin An; Gerhard A Coetzee; Kai Wang; Wange Lu
Journal:  J Biol Chem       Date:  2013-06-18       Impact factor: 5.157

7.  Micron-scale coherence in interphase chromatin dynamics.

Authors:  Alexandra Zidovska; David A Weitz; Timothy J Mitchison
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

8.  Organization of the mitotic chromosome.

Authors:  Natalia Naumova; Maxim Imakaev; Geoffrey Fudenberg; Ye Zhan; Bryan R Lajoie; Leonid A Mirny; Job Dekker
Journal:  Science       Date:  2013-11-07       Impact factor: 47.728

Review 9.  Viewing Nuclear Architecture through the Eyes of Nocturnal Mammals.

Authors:  Yana Feodorova; Martin Falk; Leonid A Mirny; Irina Solovei
Journal:  Trends Cell Biol       Date:  2020-01-22       Impact factor: 20.808

10.  Protein-mediated chromosome pairing of repetitive arrays.

Authors:  Ekaterina V Mirkin; Frederick S Chang; Nancy Kleckner
Journal:  J Mol Biol       Date:  2013-11-08       Impact factor: 5.469

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