Literature DB >> 20462378

Single-molecule studies of the replisome.

Antoine M van Oijen1, Joseph J Loparo.   

Abstract

Replication of DNA is carried out by the replisome, a multiprotein complex responsible for the unwinding of parental DNA and the synthesis of DNA on each of the two DNA strands. The impressive speed and processivity with which the replisome duplicates DNA are a result of a set of tightly regulated interactions between the replication proteins. The transient nature of these protein interactions makes it challenging to study the dynamics of the replisome by ensemble-averaging techniques. This review describes single-molecule methods that allow the study of individual replication proteins and their functioning within the replisome. The ability to mechanically manipulate individual DNA molecules and record the dynamic behavior of the replisome while it duplicates DNA has led to an improved understanding of the molecular mechanisms underlying DNA replication.

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Year:  2010        PMID: 20462378     DOI: 10.1146/annurev.biophys.093008.131327

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  21 in total

1.  High Spatiotemporal-Resolution Magnetic Tweezers: Calibration and Applications for DNA Dynamics.

Authors:  David Dulin; Tao Ju Cui; Jelmer Cnossen; Margreet W Docter; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2015-11-17       Impact factor: 4.033

Review 2.  Modeling stochastic kinetics of molecular machines at multiple levels: from molecules to modules.

Authors:  Debashish Chowdhury
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

3.  Structure of the SSB-DNA polymerase III interface and its role in DNA replication.

Authors:  Aimee H Marceau; Soon Bahng; Shawn C Massoni; Nicholas P George; Steven J Sandler; Kenneth J Marians; James L Keck
Journal:  EMBO J       Date:  2011-08-19       Impact factor: 11.598

Review 4.  Studying genomic processes at the single-molecule level: introducing the tools and applications.

Authors:  David Dulin; Jan Lipfert; M Charl Moolman; Nynke H Dekker
Journal:  Nat Rev Genet       Date:  2012-10-30       Impact factor: 53.242

Review 5.  Dynamics of lesion processing by bacterial nucleotide excision repair proteins.

Authors:  Neil M Kad; Bennett Van Houten
Journal:  Prog Mol Biol Transl Sci       Date:  2012       Impact factor: 3.622

6.  E. coli DNA replication in the absence of free β clamps.

Authors:  Nathan A Tanner; Gökhan Tolun; Joseph J Loparo; Slobodan Jergic; Jack D Griffith; Nicholas E Dixon; Antoine M van Oijen
Journal:  EMBO J       Date:  2011-03-25       Impact factor: 11.598

Review 7.  Methods to study the coupling between replicative helicase and leading-strand DNA polymerase at the replication fork.

Authors:  Divya Nandakumar; Smita S Patel
Journal:  Methods       Date:  2016-05-09       Impact factor: 3.608

Review 8.  Single-Molecule Studies of Telomeres and Telomerase.

Authors:  Joseph W Parks; Michael D Stone
Journal:  Annu Rev Biophys       Date:  2017-03-22       Impact factor: 12.981

Review 9.  Replication timing and its emergence from stochastic processes.

Authors:  John Bechhoefer; Nicholas Rhind
Journal:  Trends Genet       Date:  2012-04-18       Impact factor: 11.639

Review 10.  Molecular traffic jams on DNA.

Authors:  Ilya J Finkelstein; Eric C Greene
Journal:  Annu Rev Biophys       Date:  2013-02-28       Impact factor: 12.981

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