| Literature DB >> 20459794 |
Petr Chlapek1, Martina Redova, Karel Zitterbart, Marketa Hermanova, Jaroslav Sterba, Renata Veselska.
Abstract
BACKGROUND: We performed expression profiling of two neuroblastoma cell lines, SK-N-BE(2) and SH-SY5Y, after combined treatment with all-trans retinoic acid (ATRA) and inhibitors of lipoxygenases (LOX) and cyclooxygenases (COX). This study is a continuation of our previous work confirming the possibility of enhancing ATRA-induced cell differentiation in these cell lines by the application of LOX/COX inhibitors and brings more detailed information concerning the mechanisms of the enhancement of ATRA-induced differentiation of neuroblastoma cells.Entities:
Mesh:
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Year: 2010 PMID: 20459794 PMCID: PMC2874523 DOI: 10.1186/1756-9966-29-45
Source DB: PubMed Journal: J Exp Clin Cancer Res ISSN: 0392-9078
Figure 1Results of gene cluster analysis. Genes were clustered according to type of changes in expression in particular cell lines (SK-N-BE(2) or SH-SY5Y) after combined treatment with ATRA and particular inhibitors (CA or CX). ATRA was applied in concentrations of 1 or 10 μM (1 ATRA, 10 ATRA); CA in concentrations of 13 and 52 μM (13 CA, 52 CA), and CX in concentrations of 10 and 50 μM (10 CX, 50 CX). The green color at the farthest left end of the color scale corresponds to the minimal value; the red color at the farthest right end of the color scale corresponds to the maximal value; and the black color in the middle of the color scale corresponds to the average value. Each of the other values corresponds to a certain color according to its magnitude. The colors are assigned according to the value of the particular gene expression in all samples in the respective experimental variant (I, II, III or IV).
Description of different types of changes in gene expression after combined treatment with ATRA and inhibitors (CA or CX) in SK-N-BE(2) and SH-SY5Y cell lines
| cluster | number of genes | type of change in gene expression |
|---|---|---|
| I.A | 7 | strong increase especially after treatment with 10 ATRA/52 CA; marked increase noted also after treatment with 1 ATRA alone and all other combinations |
| I.B | 14 | marked increase especially after treatment with 1 ATRA/13 CA; the increase noted also after treatment with 1 ATRA alone |
| I.C | 18 | marked increase especially after treatment with 1 ATRA and also both combinations of ATRA with CA; 10 ATRA alone or in combinations with CA decreases gene expression |
| I.D | 6 | slight increase after treatment with 1 RA; marked decrease after treatment with 10 RA and all combinations |
| I.E | 5 | decrease after treatment with 10 ATRA in both combinations with CA |
| II.A | 12 | strong increase especially after treatment with 10 ATRA/52 CA; marked increase noted also after treatment with 10 ATRA alone and all other combinations in concentration-dependent manner |
| II.B | 58 | marked increase especially after treatment with 1 ATRA in both combinations with CA and also after treatment with 10 ATRA/52 CA; application of ATRA alone showed no influence on gene expression |
| II.C | 27 | marked increase after treatment with 1 ATRA in both combinations; application of ATRA alone and 10 ATRA in both combinations showed no influence on gene expression |
| II.D | 4 | strong increase after treatment with 10 ATRA/52 CA; application of ATRA alone and all other combinations showed no or minimal influence on gene expression |
| III.A | 6 | strong increase after treatment with 10 ATRA/10 CX and 1 ATRA/50 CX; slight increase after treatment with 1 ATRA/10 CX; application of ATRA alone showed no or minimal influence on gene expression |
| III.B | 6 | marked increase after treatment with ATRA in all combinations with CX; treatment with 1 ATRA alone showed the same effect on gene expression as observable in control cells |
| III.C | 22 | strong increase after treatment with ATRA in all combinations with CX; slight increase after treatment with 1 ATRA alone |
| III.D | 4 | marked increase after treatment with ATRA in all combinations with CX; decrease after treatment with ATRA alone |
| III.E | 60 | strong increase after treatment with 1 ATRA/10 CX; slight increase after treatment with 1 ATRA alone |
| IV.A | 15 | marked increase after treatment with 10 ATRA alone and also in both combinations with CX; application of 1 ATRA alone or in combinations with CX showed no or minimal influence on gene expression |
| IV.B | 15 | strong increase after treatment with 1 ATRA/10 CX; slight increase after treatment with 10 ATRA in both combinations with CX |
| IV.C | 32 | strong increase after treatment with 10 ATRA/50 CX |
| IV.D | 4 | marked increase after treatment with 1 ATRA/10 CX; marked decrease after treatment with all other combinations |
ATRA was applied in concentrations of 1 or 10 μM (1 ATRA, 10 ATRA); CA in concentrations of 13 and 52 μM (13 CA, 52 CA), and CX in concentrations of 10 and 50 μM (10 CX, 50 CX). All decriptions are related to the gene expression identified in control untreated cells.
Genes with changed expression detected in particular cell line (SK-N-BE(2) or SH-SY5Y) after combined treatment with ATRA and both inhibitors (CA or CX)
| SK-N-BE(2) cell line | |
|---|---|
ATRA was applied in concentrations of 1 or 10 μM (1 ATRA, 10 ATRA); CA in concentrations of 13 and 52 μM (13 CA, 52 CA), and CX in concentrations of 10 and 50 μM (10 CX, 50 CX). The same genes influenced in both cell lines are underlined.
Genes with changed expression detected after the same combined treatment (ATRA with CA or ATRA with CX) in both cell lines (SK-N-BE(2) and SH-SY5Y)
| Treatment with ATRA and CA | |
|---|---|
ATRA was applied in concentrations of 1 or 10 μM (1 ATRA, 10 ATRA); CA in concentrations of 13 and 52 μM (13 CA, 52 CA), and CX in concentrations of 10 and 50 μM (10 CX, 50 CX). The same genes influenced by combinations with both inhibitors are underlined.