Literature DB >> 20445256

Crystallization and preliminary crystallographic analysis of the central domain of Drosophila Dribble, a protein that is essential for ribosome biogenesis.

Tat Cheung Cheng1, Yu Wai Chen, Kam Bo Wong, Sai-Ming Ngai, H Y Edwin Chan.   

Abstract

Dribble (DBE) is a Drosophila protein that is essential for ribosome biogenesis. Bioinformatics analysis revealed a folded central domain of DBE which is flanked by structural disorder in the N- and C-terminal regions. The protein fragment spanning amino-acid residues 16-197 (DBE(16-197)) was produced for structural determination. In this report, the crystallization and preliminary X-ray diffraction data analysis of the DBE(16-197) protein domain are described. Crystals of DBE(16-197) were grown by the sitting-drop vapour-diffusion method at 289 K using ammonium phosphate as a precipitant. The crystals belonged to space group P2(1)2(1)2(1). Data were collected that extended to beyond 2 A resolution.

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Year:  2010        PMID: 20445256      PMCID: PMC2864689          DOI: 10.1107/S1744309110011206

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  16 in total

1.  Dribble, the Drosophila KRR1p homologue, is involved in rRNA processing.

Authors:  H Y Chan; S Brogna; C J O'Kane
Journal:  Mol Biol Cell       Date:  2001-05       Impact factor: 4.138

2.  Yeast Krr1p physically and functionally interacts with a novel essential Kri1p, and both proteins are required for 40S ribosome biogenesis in the nucleolus.

Authors:  T Sasaki; A Toh-E; Y Kikuchi
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

3.  A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis.

Authors:  François Dragon; Jennifer E G Gallagher; Patricia A Compagnone-Post; Brianna M Mitchell; Kara A Porwancher; Karen A Wehner; Steven Wormsley; Robert E Settlage; Jeffrey Shabanowitz; Yvonne Osheim; Ann L Beyer; Donald F Hunt; Susan J Baserga
Journal:  Nature       Date:  2002-06-09       Impact factor: 49.962

4.  90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.

Authors:  Paola Grandi; Vladimir Rybin; Jochen Bassler; Elisabeth Petfalski; Daniela Strauss; Martina Marzioch; Thorsten Schäfer; Bernhard Kuster; Herbert Tschochner; David Tollervey; Anne Claude Gavin; Ed Hurt
Journal:  Mol Cell       Date:  2002-07       Impact factor: 17.970

5.  Optimizing long intrinsic disorder predictors with protein evolutionary information.

Authors:  Kang Peng; Slobodan Vucetic; Predrag Radivojac; Celeste J Brown; A Keith Dunker; Zoran Obradovic
Journal:  J Bioinform Comput Biol       Date:  2005-02       Impact factor: 1.122

6.  The small-subunit processome is a ribosome assembly intermediate.

Authors:  Kara A Bernstein; Jennifer E G Gallagher; Brianna M Mitchell; Sander Granneman; Susan J Baserga
Journal:  Eukaryot Cell       Date:  2004-12

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

8.  Functional and physical interactions of Krr1p, a Saccharomyces cerevisiae nucleolar protein.

Authors:  Robert Gromadka; Iwona Karkusiewicz; Bozenna Rempoła; Joanna Rytka
Journal:  Acta Biochim Pol       Date:  2004       Impact factor: 2.149

9.  Identification of a Giardia krr1 homolog gene and the secondarily anucleolate condition of Giaridia lamblia.

Authors:  De-Dong Xin; Jian-Fan Wen; De He; Si-Qi Lu
Journal:  Mol Biol Evol       Date:  2004-11-17       Impact factor: 16.240

10.  A graphical user interface to the CCP4 program suite.

Authors:  Elizabeth Potterton; Peter Briggs; Maria Turkenburg; Eleanor Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-06-27
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