Literature DB >> 20441766

Simple dark-field microscopy with nanometer spatial precision and microsecond temporal resolution.

Hiroshi Ueno1, So Nishikawa, Ryota Iino, Kazuhito V Tabata, Shouichi Sakakihara, Toshio Yanagida, Hiroyuki Noji.   

Abstract

Molecular motors such as kinesin, myosin, and F(1)-ATPase are responsible for many important cellular processes. These motor proteins exhibit nanometer-scale, stepwise movements on micro- to millisecond timescales. So far, methods developed to measure these small and fast movements with high spatial and temporal resolution require relatively complicated experimental systems. Here, we describe a simple dark-field imaging system that employs objective-type evanescent illumination to selectively illuminate a thin layer on the coverslip and thus yield images with high signal/noise ratios. Only by substituting the dichroic mirror in conventional objective-type total internal reflection fluorescence microscope with a perforated mirror, were nanometer spatial precision and microsecond temporal resolution simultaneously achieved. This system was applied to the study of the rotary mechanism of F(1)-ATPase. The fluctuation of a gold nanoparticle attached to the gamma-subunit during catalytic dwell and the stepping motion during torque generation were successfully visualized with 9.1-mus temporal resolution. Because of the simple optics, this system will be applicable to various biophysical studies requiring high spatial and temporal resolution in vitro and also in vivo. Copyright (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20441766      PMCID: PMC2862163          DOI: 10.1016/j.bpj.2010.01.011

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  58 in total

1.  Imaging and tracking of single GFP molecules in solution.

Authors:  U Kubitscheck; O Kückmann; T Kues; R Peters
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

Review 2.  Inter-subunit rotation and elastic power transmission in F0F1-ATPase.

Authors:  W Junge; O Pänke; D A Cherepanov; K Gumbiowski; M Müller; S Engelbrecht
Journal:  FEBS Lett       Date:  2001-08-31       Impact factor: 4.124

Review 3.  Total internal reflection fluorescence microscopy in cell biology.

Authors:  D Axelrod
Journal:  Traffic       Date:  2001-11       Impact factor: 6.215

4.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

5.  Catalysis and rotation of F1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation.

Authors:  Katsuya Shimabukuro; Ryohei Yasuda; Eiro Muneyuki; Kiyotaka Y Hara; Kazuhiko Kinosita; Masasuke Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

6.  Evanescent wave scattering and local electric field enhancement at ellipsoidal silver particles in the vicinity of a glass surface.

Authors:  Jan Renger; Stefan Grafström; Lukas M Eng; Volker Deckert
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2004-07       Impact factor: 2.129

7.  Tracking kinesin-driven movements with nanometre-scale precision.

Authors:  J Gelles; B J Schnapp; M P Sheetz
Journal:  Nature       Date:  1988-02-04       Impact factor: 49.962

8.  Single molecule imaging of green fluorescent proteins in living cells: E-cadherin forms oligomers on the free cell surface.

Authors:  R Iino; I Koyama; A Kusumi
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

Review 9.  Bacterial flagellar motor.

Authors:  Yoshiyuki Sowa; Richard M Berry
Journal:  Q Rev Biophys       Date:  2008-05       Impact factor: 5.318

10.  Temperature-sensitive reaction intermediate of F1-ATPase.

Authors:  Rikiya Watanabe; Ryota Iino; Katsuya Shimabukuro; Masasuke Yoshida; Hiroyuki Noji
Journal:  EMBO Rep       Date:  2007-12-07       Impact factor: 8.807

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  37 in total

1.  A change in the radius of rotation of F1-ATPase indicates a tilting motion of the central shaft.

Authors:  Mitsuhiro Sugawa; Kaoru A Okada; Tomoko Masaike; Takayuki Nishizaka
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

2.  Measuring the size and charge of single nanoscale objects in solution using an electrostatic fluidic trap.

Authors:  Nassiredin Mojarad; Madhavi Krishnan
Journal:  Nat Nanotechnol       Date:  2012-06-24       Impact factor: 39.213

3.  Phosphate release in F1-ATPase catalytic cycle follows ADP release.

Authors:  Rikiya Watanabe; Ryota Iino; Hiroyuki Noji
Journal:  Nat Chem Biol       Date:  2010-09-26       Impact factor: 15.040

4.  Basic properties of rotary dynamics of the molecular motor Enterococcus hirae V1-ATPase.

Authors:  Yoshihiro Minagawa; Hiroshi Ueno; Mayu Hara; Yoshiko Ishizuka-Katsura; Noboru Ohsawa; Takaho Terada; Mikako Shirouzu; Shigeyuki Yokoyama; Ichiro Yamato; Eiro Muneyuki; Hiroyuki Noji; Takeshi Murata; Ryota Iino
Journal:  J Biol Chem       Date:  2013-10-02       Impact factor: 5.157

5.  Catalysis-enhancement via rotary fluctuation of F1-ATPase.

Authors:  Rikiya Watanabe; Kumiko Hayashi; Hiroshi Ueno; Hiroyuki Noji
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

6.  Insights into Kinesin-1 Stepping from Simulations and Tracking of Gold Nanoparticle-Labeled Motors.

Authors:  Keith J Mickolajczyk; Annan S I Cook; Janak P Jevtha; John Fricks; William O Hancock
Journal:  Biophys J       Date:  2019-06-20       Impact factor: 4.033

7.  Revealing Compartmentalized Diffusion in Living Cells with Interferometric Scattering Microscopy.

Authors:  Gabrielle de Wit; David Albrecht; Helge Ewers; Philipp Kukura
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

8.  High-resolution single-molecule characterization of the enzymatic states in Escherichia coli F1-ATPase.

Authors:  Thomas Bilyard; Mayumi Nakanishi-Matsui; Bradley C Steel; Teuta Pilizota; Ashley L Nord; Hiroyuki Hosokawa; Masamitsu Futai; Richard M Berry
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-12-24       Impact factor: 6.237

9.  Biased Brownian stepping rotation of FoF1-ATP synthase driven by proton motive force.

Authors:  Rikiya Watanabe; Kazuhito V Tabata; Ryota Iino; Hiroshi Ueno; Masayuki Iwamoto; Shigetoshi Oiki; Hiroyuki Noji
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Single-molecule imaging analysis of elementary reaction steps of Trichoderma reesei cellobiohydrolase I (Cel7A) hydrolyzing crystalline cellulose Iα and IIII.

Authors:  Yusuke Shibafuji; Akihiko Nakamura; Takayuki Uchihashi; Naohisa Sugimoto; Shingo Fukuda; Hiroki Watanabe; Masahiro Samejima; Toshio Ando; Hiroyuki Noji; Anu Koivula; Kiyohiko Igarashi; Ryota Iino
Journal:  J Biol Chem       Date:  2014-04-01       Impact factor: 5.157

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