Literature DB >> 2043630

Crotonase-catalyzed beta-elimination is concerted: a double isotope effect study.

B J Bahnson1, V E Anderson.   

Abstract

Determining the sequence of bond cleavages, and consequently the nature of intermediates, in enzyme-catalyzed reactions is a major goal of mechanistic enzymology. When significant primary isotope effects on V/K are observed for two different bond cleavages, both bonds may be broken in the same transition state or they can reflect two different transition states that are of nearly identical energy and consequently both are partially rate limiting. For the crotonase-catalyzed dehydration of 3-hydroxybutyrylpantetheine, the primary D(V/K) and 18(V/K) are 1.60 and 1.053 [Bahnson, B. J., & Anderson, V. E. (1989) Biochemistry 28, 4173-4181], respectively. In this case, double isotope effects can discriminate between the two possibilities [Hermes, J. D., Roeske, C. A., O'Leary, M. H., & Cleland, W. W. (1982) Biochemistry 21, 5106-5114; Belasco, J. G., Albery, W. J., & Knowles, J. R. (1983) J. Am. Chem. Soc. 105, 2475-2477]. The ratio of the alpha-secondary D(V/K) for the hydration of crotonylpantetheine catalyzed by crotonase in H2O and D2O has been determined to be 1.003 +/- 0.006. The invariance of the alpha-secondary effect where the chemical reaction is completely rate determining requires that both bond cleavages be concerted or that the substitution of 2H at the primary position not significantly alter the partitioning of a hypothetical carbanion. The observation of a solvent discrimination isotope effect determined from the relative incorporation of 2H from 50% D2O of 1.60 +/- 0.03, identical with the primary D(V/K), and the determination that the rate of exchange of the abstracted proton with solvent proceeds at less than 3% of the overall reaction rate also fail to provide evidence for a carbanion intermediate and are consistent with a concerted reaction. Identical primary D(V/K)s determined in H2O and D2O indicate that there is not a significant solvent isotope effect on C-O bond cleavage. The isotope ratios determined in these studies were performed by negative ion chemical ionization whole molecule mass spectrometry of the pentafluorobenzyl esters, a new method whose validity is established by comparison with previously determined kinetic and equilibrium isotope effects.

Entities:  

Mesh:

Substances:

Year:  1991        PMID: 2043630     DOI: 10.1021/bi00238a013

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  Purification and Characterization of Maleate Hydratase from Pseudomonas pseudoalcaligenes.

Authors:  M J van der Werf; W J van den Tweel; S Hartmans
Journal:  Appl Environ Microbiol       Date:  1993-09       Impact factor: 4.792

2.  Crystal structure of enoyl-coenzyme A (CoA) hydratase at 2.5 angstroms resolution: a spiral fold defines the CoA-binding pocket.

Authors:  C K Engel; M Mathieu; J P Zeelen; J K Hiltunen; R K Wierenga
Journal:  EMBO J       Date:  1996-10-01       Impact factor: 11.598

3.  The multifunctional protein in peroxisomal beta-oxidation: structure and substrate specificity of the Arabidopsis thaliana protein MFP2.

Authors:  Susan Arent; Caspar E Christensen; Valerie E Pye; Allan Nørgaard; Anette Henriksen
Journal:  J Biol Chem       Date:  2010-05-12       Impact factor: 5.157

4.  Role of a critical water in scytalone dehydratase-catalyzed reaction.

Authors:  Y J Zheng; T C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

5.  Transition State Structure for the Hydrolysis of NAD Catalyzed by Diphtheria Toxin.

Authors:  Paul J Berti; Steven R Blanke; Vern L Schramm
Journal:  J Am Chem Soc       Date:  1997-12-17       Impact factor: 15.419

6.  Kinetic isotope effects reveal early transition state of protein lysine methyltransferase SET8.

Authors:  Joshua A Linscott; Kanishk Kapilashrami; Zhen Wang; Chamara Senevirathne; Ian R Bothwell; Gil Blum; Minkui Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-09       Impact factor: 11.205

Review 7.  Fundamental challenges in mechanistic enzymology: progress toward understanding the rate enhancements of enzymes.

Authors:  Daniel Herschlag; Aditya Natarajan
Journal:  Biochemistry       Date:  2013-03-14       Impact factor: 3.162

Review 8.  Active site comparisons and catalytic mechanisms of the hot dog superfamily.

Authors:  Jason W Labonte; Craig A Townsend
Journal:  Chem Rev       Date:  2012-12-03       Impact factor: 60.622

9.  Theoretical study on the chemical mechanism of enoyl-CoA hydratase and the form of inhibitor binding.

Authors:  Xiaobin Cui; Rongxing He; Qinlei Yang; Wei Shen; Ming Li
Journal:  J Mol Model       Date:  2014-09-02       Impact factor: 1.810

10.  Inaccuracies in selected ion monitoring determination of isotope ratios obviated by profile acquisition: nucleotide 18O/16O measurements.

Authors:  Adam G Cassano; Benlian Wang; David R Anderson; Stephen Previs; Michael E Harris; Vernon E Anderson
Journal:  Anal Biochem       Date:  2007-04-02       Impact factor: 3.365

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.