Literature DB >> 20435765

Practical method for extraction of PCR-quality DNA from environmental soil samples.

Kelly A Fitzpatrick1, Gilbert J Kersh, Robert F Massung.   

Abstract

Methods for the extraction of PCR-quality DNA from environmental soil samples by using pairs of commercially available kits were evaluated. Coxiella burnetii DNA was detected in spiked soil samples at <1,000 genome equivalents per gram of soil and in 12 (16.4%) of 73 environmental soil samples.

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Substances：

Year:  2010        PMID： 20435765      PMCID： PMC2897455          DOI： 10.1128/AEM.02825-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  8 in total

1.  A strategy for optimizing quality and quantity of DNA extracted from soil.

Authors:  H Bürgmann; M Pesaro; F Widmer; J Zeyer
Journal:  J Microbiol Methods       Date:  2001-05       Impact factor: 2.363

2.  Removal of PCR inhibitors from soil DNA by chemical flocculation.

Authors:  Michael D Braid; Laura M Daniels; Christopher L Kitts
Journal:  J Microbiol Methods       Date:  2003-03       Impact factor: 2.363

3.  Recovery of DNA from soils and sediments.

Authors:  R J Steffan; J Goksøyr; A K Bej; R M Atlas
Journal:  Appl Environ Microbiol       Date:  1988-12       Impact factor: 4.792

4.  Comparative analysis of environmental DNA extraction and purification methods from different humic acid-rich soils.

Authors:  F M Lakay; A Botha; B A Prior
Journal:  J Appl Microbiol       Date:  2007-01       Impact factor: 3.772

Review 5.  Overview of DNA purification for nucleic acid-based diagnostics from environmental and clinical samples.

Authors:  Knut Rudi; Kjetill S Jakobsen
Journal:  Methods Mol Biol       Date:  2006

6.  Rickettsial agents in Egyptian ticks collected from domestic animals.

Authors:  Amanda D Loftis; Will K Reeves; Daniel E Szumlas; Magda M Abbassy; Ibrahim M Helmy; John R Moriarity; Gregory A Dasch
Journal:  Exp Appl Acarol       Date:  2006-09-27       Impact factor: 2.132

7.  Q fever in humans and animals in the United States.

Authors:  Jennifer H McQuiston; James E Childs
Journal:  Vector Borne Zoonotic Dis       Date:  2002       Impact factor: 2.133

8.  Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast.

Authors:  C C Tebbe; W Vahjen
Journal:  Appl Environ Microbiol       Date:  1993-08       Impact factor: 4.792
  8 in total
  9 in total

1.  Presence of Coxiella burnetii DNA in the environment of the United States, 2006 to 2008.

Authors:  Gilbert J Kersh; Teresa M Wolfe; Kelly A Fitzpatrick; Amanda J Candee; Lindsay D Oliver; Nicole E Patterson; Joshua S Self; Rachael A Priestley; Amanda D Loftis; Robert F Massung
Journal:  Appl Environ Microbiol       Date:  2010-05-14       Impact factor: 4.792

2.  Detection of Coxiella burnetii DNA on small-ruminant farms during a Q fever outbreak in the Netherlands.

Authors:  A de Bruin; R Q J van der Plaats; L de Heer; R Paauwe; B Schimmer; P Vellema; B J van Rotterdam; Y T H P van Duynhoven
Journal:  Appl Environ Microbiol       Date:  2012-01-13       Impact factor: 4.792

3.  Genotyping and Axenic Growth of Coxiella burnetii Isolates Found in the United States Environment.

Authors:  Gilbert J Kersh; Rachael A Priestley; Heidie M Hornstra; Joshua S Self; Kelly A Fitzpatrick; Brad J Biggerstaff; Paul Keim; Talima Pearson; Robert F Massung
Journal:  Vector Borne Zoonotic Dis       Date:  2016-06-15       Impact factor: 2.133

4.  Presence and persistence of Coxiella burnetii in the environments of goat farms associated with a Q fever outbreak.

Authors:  Gilbert J Kersh; Kelly A Fitzpatrick; Joshua S Self; Rachael A Priestley; Aubree J Kelly; R Ryan Lash; Nicola Marsden-Haug; Randall J Nett; Adam Bjork; Robert F Massung; Alicia D Anderson
Journal:  Appl Environ Microbiol       Date:  2013-01-11       Impact factor: 4.792

5.  Multiple strains of Coxiella burnetii are present in the environment of St. Paul Island, Alaska.

Authors:  C Duncan; K Savage; M Williams; B Dickerson; A V Kondas; K A Fitzpatrick; J L Guerrero; T Spraker; G J Kersh
Journal:  Transbound Emerg Dis       Date:  2012-07-02       Impact factor: 5.005

6.  Coxiella burnetii Infection in a Community Operating a Large-Scale Cow and Goat Dairy, Missouri, 2013.

Authors:  Holly M Biggs; George Turabelidze; Drew Pratt; Suzanne R Todd; Kara Jacobs-Slifka; Naomi A Drexler; Gail McCurdy; Jennifer Lloyd; Charles L Evavold; Kelly A Fitzpatrick; Rachael A Priestley; Joseph Singleton; David Sun; Minh Tang; Cecilia Kato; Gilbert J Kersh; Alicia Anderson
Journal:  Am J Trop Med Hyg       Date:  2016-01-25       Impact factor: 2.345

7.  Detection of Plasmodium in faeces of the New World primate Alouatta clamitans.

Authors:  Gabriela Maíra Pereira de Assis; Denise Anete Madureira de Alvarenga; Daniela Camargos Costa; Júlio César de Souza; Zelinda Maria Braga Hirano; Flora Satiko Kano; Taís Nóbrega de Sousa; Cristiana Ferreira Alves de Brito
Journal:  Mem Inst Oswaldo Cruz       Date:  2016-08-25       Impact factor: 2.743

8.  Comparison of two DNA extraction methods from larvae, pupae, and adults of Aedes aegypti.

Authors:  Josué M de la Cruz-Ramos; Luis M Hernández-Triana; Cristina García-De la Peña; Vicente H González-Álvarez; James Weger-Lucarelli; Quetzaly Karmy Siller-Rodríguez; Francisco J Sánchez Rámos; Américo D Rodríguez; Aldo I Ortega-Morales
Journal:  Heliyon       Date:  2019-10-16

9.  Analysis of Bacillus thuringiensis Population Dynamics and Its Interaction With Pseudomonas fluorescens in Soil.

Authors:  Norma Elena Rojas-Ruiz; Estibaliz Sansinenea-Royano; Maria Lilia Cedillo-Ramirez; Rodolfo Marsch-Moreno; Patricia Sanchez-Alonso; Candelario Vazquez-Cruz
Journal:  Jundishapur J Microbiol       Date:  2015-09-08       Impact factor: 0.747
  9 in total

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