Literature DB >> 20434984

c-Myc regulates transcriptional pause release.

Peter B Rahl1, Charles Y Lin, Amy C Seila, Ryan A Flynn, Scott McCuine, Christopher B Burge, Phillip A Sharp, Richard A Young.   

Abstract

Recruitment of the RNA polymerase II (Pol II) transcription initiation apparatus to promoters by specific DNA-binding transcription factors is well recognized as a key regulatory step in gene expression. We report here that promoter-proximal pausing is a general feature of transcription by Pol II in mammalian cells and thus an additional step where regulation of gene expression occurs. This suggests that some transcription factors recruit the transcription apparatus to promoters, whereas others effect promoter-proximal pause release. Indeed, we find that the transcription factor c-Myc, a key regulator of cellular proliferation, plays a major role in Pol II pause release rather than Pol II recruitment at its target genes. We discuss the implications of these results for the role of c-Myc amplification in human cancer. 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20434984      PMCID: PMC2864022          DOI: 10.1016/j.cell.2010.03.030

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  76 in total

1.  RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.

Authors:  Kira Glover-Cutter; Soojin Kim; Joaquin Espinosa; David L Bentley
Journal:  Nat Struct Mol Biol       Date:  2007-12-23       Impact factor: 15.369

2.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

Review 3.  Pre-mRNA processing reaches back to transcription and ahead to translation.

Authors:  Melissa J Moore; Nick J Proudfoot
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

4.  Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells.

Authors:  H Niwa; J Miyazaki; A G Smith
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

5.  P-TEFb kinase recruitment and function at heat shock loci.

Authors:  J T Lis; P Mason; J Peng; D H Price; J Werner
Journal:  Genes Dev       Date:  2000-04-01       Impact factor: 11.361

6.  Oct4 and LIF/Stat3 additively induce Krüppel factors to sustain embryonic stem cell self-renewal.

Authors:  John Hall; Ge Guo; Jason Wray; Isobel Eyres; Jennifer Nichols; Lars Grotewold; Sofia Morfopoulou; Peter Humphreys; William Mansfield; Rachael Walker; Simon Tomlinson; Austin Smith
Journal:  Cell Stem Cell       Date:  2009-12-04       Impact factor: 24.633

7.  Multiple independent binding sites for small-molecule inhibitors on the oncoprotein c-Myc.

Authors:  Dalia I Hammoudeh; Ariele Viacava Follis; Edward V Prochownik; Steven J Metallo
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

Review 8.  Defining mechanisms that regulate RNA polymerase II transcription in vivo.

Authors:  Nicholas J Fuda; M Behfar Ardehali; John T Lis
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

9.  The landscape of somatic copy-number alteration across human cancers.

Authors:  Rameen Beroukhim; Craig H Mermel; Dale Porter; Guo Wei; Soumya Raychaudhuri; Jerry Donovan; Jordi Barretina; Jesse S Boehm; Jennifer Dobson; Mitsuyoshi Urashima; Kevin T Mc Henry; Reid M Pinchback; Azra H Ligon; Yoon-Jae Cho; Leila Haery; Heidi Greulich; Michael Reich; Wendy Winckler; Michael S Lawrence; Barbara A Weir; Kumiko E Tanaka; Derek Y Chiang; Adam J Bass; Alice Loo; Carter Hoffman; John Prensner; Ted Liefeld; Qing Gao; Derek Yecies; Sabina Signoretti; Elizabeth Maher; Frederic J Kaye; Hidefumi Sasaki; Joel E Tepper; Jonathan A Fletcher; Josep Tabernero; José Baselga; Ming-Sound Tsao; Francesca Demichelis; Mark A Rubin; Pasi A Janne; Mark J Daly; Carmelo Nucera; Ross L Levine; Benjamin L Ebert; Stacey Gabriel; Anil K Rustgi; Cristina R Antonescu; Marc Ladanyi; Anthony Letai; Levi A Garraway; Massimo Loda; David G Beer; Lawrence D True; Aikou Okamoto; Scott L Pomeroy; Samuel Singer; Todd R Golub; Eric S Lander; Gad Getz; William R Sellers; Matthew Meyerson
Journal:  Nature       Date:  2010-02-18       Impact factor: 49.962

10.  Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells.

Authors:  Lioudmila V Sharova; Alexei A Sharov; Timur Nedorezov; Yulan Piao; Nabeebi Shaik; Minoru S H Ko
Journal:  DNA Res       Date:  2008-11-11       Impact factor: 4.458

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  733 in total

1.  DNase I hypersensitive site II of the human growth hormone locus control region mediates an essential and distinct long-range enhancer function.

Authors:  Margaret R Fleetwood; Yugong Ho; Nancy E Cooke; Stephen A Liebhaber
Journal:  J Biol Chem       Date:  2012-06-05       Impact factor: 5.157

Review 2.  RNA polymerase II elongation control.

Authors:  Qiang Zhou; Tiandao Li; David H Price
Journal:  Annu Rev Biochem       Date:  2012-03-09       Impact factor: 23.643

Review 3.  Coupling polymerase pausing and chromatin landscapes for precise regulation of transcription.

Authors:  Daniel A Gilchrist; Karen Adelman
Journal:  Biochim Biophys Acta       Date:  2012-03-02

Review 4.  PIM1: a promising target in patients with triple-negative breast cancer.

Authors:  Wen Zhao; RuiYue Qiu; Pan Li; Jin Yang
Journal:  Med Oncol       Date:  2017-07-18       Impact factor: 3.064

5.  Argonaute-bound small RNAs from promoter-proximal RNA polymerase II.

Authors:  Jesse R Zamudio; Timothy J Kelly; Phillip A Sharp
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

6.  Targeting MYC sensitizes malignant mesothelioma cells to PAK blockage-induced cytotoxicity.

Authors:  Yinfei Tan; Eleonora Sementino; Jonathan Chernoff; Joseph R Testa
Journal:  Am J Cancer Res       Date:  2017-08-01       Impact factor: 6.166

7.  PAF1 regulation of promoter-proximal pause release via enhancer activation.

Authors:  Fei Xavier Chen; Peng Xie; Clayton K Collings; Kaixiang Cao; Yuki Aoi; Stacy A Marshall; Emily J Rendleman; Michal Ugarenko; Patrick A Ozark; Anda Zhang; Ramin Shiekhattar; Edwin R Smith; Michael Q Zhang; Ali Shilatifard
Journal:  Science       Date:  2017-08-31       Impact factor: 47.728

8.  Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells.

Authors:  Alla A Sigova; Alan C Mullen; Benoit Molinie; Sumeet Gupta; David A Orlando; Matthew G Guenther; Albert E Almada; Charles Lin; Phillip A Sharp; Cosmas C Giallourakis; Richard A Young
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

Review 9.  MYC, Metabolism, and Cancer.

Authors:  Zachary E Stine; Zandra E Walton; Brian J Altman; Annie L Hsieh; Chi V Dang
Journal:  Cancer Discov       Date:  2015-09-17       Impact factor: 39.397

10.  Transcriptional Pause Sites Delineate Stable Nucleosome-Associated Premature Polyadenylation Suppressed by U1 snRNP.

Authors:  Anthony C Chiu; Hiroshi I Suzuki; Xuebing Wu; Dig B Mahat; Andrea J Kriz; Phillip A Sharp
Journal:  Mol Cell       Date:  2018-02-01       Impact factor: 17.970

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