Literature DB >> 20426069

Think global, act local; projectome estimation with BlueMatter.

Anthony J Sherbondy1, Robert F Dougherty, Rajagopal Ananthanarayanan, Dharmendra S Modha, Brian A Wandell.   

Abstract

Estimating the complete set of white matter fascicles (the projectome) from diffusion data requires evaluating an enormous number of potential pathways; consequently, most algorithms use computationally efficient greedy methods to search for pathways. The limitation of this approach is that critical global parameters--such as data prediction error and white matter volume conservation--are not taken into account. We describe BlueMatter, a parallel algorithm for global projectome evaluation, which uniquely accounts for global prediction error and volume conservation. Leveraging the BlueGene/L supercomputing architecture, BlueMatter explores a massive database of 180 billion candidate fascicles. The candidates are derived from several sources, including atlases and multiple tractography algorithms. Using BlueMatter we created the highest resolution, volume-conserved projectome of the human brain.

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Year:  2009        PMID: 20426069      PMCID: PMC3076280          DOI: 10.1007/978-3-642-04268-3_106

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  14 in total

1.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm.

Authors:  Y Zhang; M Brady; S Smith
Journal:  IEEE Trans Med Imaging       Date:  2001-01       Impact factor: 10.048

2.  In vivo fiber tractography using DT-MRI data.

Authors:  P J Basser; S Pajevic; C Pierpaoli; J Duda; A Aldroubi
Journal:  Magn Reson Med       Date:  2000-10       Impact factor: 4.668

Review 3.  Fiber tracking: principles and strategies - a technical review.

Authors:  Susumu Mori; Peter C M van Zijl
Journal:  NMR Biomed       Date:  2002 Nov-Dec       Impact factor: 4.044

Review 4.  Diffusion-tensor MRI: theory, experimental design and data analysis - a technical review.

Authors:  Peter J Basser; Derek K Jones
Journal:  NMR Biomed       Date:  2002 Nov-Dec       Impact factor: 4.044

5.  Diffusion tensor imaging of the visual sensory pathway: are we there yet?

Authors:  Neil R Miller
Journal:  Am J Ophthalmol       Date:  2005-11       Impact factor: 5.258

6.  Probabilistic anatomical connectivity derived from the microscopic persistent angular structure of cerebral tissue.

Authors:  Geoffrey J M Parker; Daniel C Alexander
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-05-29       Impact factor: 6.237

7.  Geometrically constrained two-tensor model for crossing tracts in DWI.

Authors:  Sharon Peled; Ola Friman; Ferenc Jolesz; Carl-Fredrik Westin
Journal:  Magn Reson Imaging       Date:  2006-09-12       Impact factor: 2.546

8.  Regularization of diffusion-based direction maps for the tracking of brain white matter fascicles.

Authors:  C Poupon; C A Clark; V Frouin; J Régis; I Bloch; D Le Bihan; J Mangin
Journal:  Neuroimage       Date:  2000-08       Impact factor: 6.556

9.  ConTrack: finding the most likely pathways between brain regions using diffusion tractography.

Authors:  Anthony J Sherbondy; Robert F Dougherty; Michal Ben-Shachar; Sandy Napel; Brian A Wandell
Journal:  J Vis       Date:  2008-07-29       Impact factor: 2.240

10.  White matter tractography using diffusion tensor deflection.

Authors:  Mariana Lazar; David M Weinstein; Jay S Tsuruda; Khader M Hasan; Konstantinos Arfanakis; M Elizabeth Meyerand; Benham Badie; Howard A Rowley; Victor Haughton; Aaron Field; Andrew L Alexander
Journal:  Hum Brain Mapp       Date:  2003-04       Impact factor: 5.038

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  15 in total

Review 1.  Advances in computational and statistical diffusion MRI.

Authors:  Lauren J O'Donnell; Alessandro Daducci; Demian Wassermann; Christophe Lenglet
Journal:  NMR Biomed       Date:  2017-11-14       Impact factor: 4.044

2.  Anatomical properties of the arcuate fasciculus predict phonological and reading skills in children.

Authors:  Jason D Yeatman; Robert F Dougherty; Elena Rykhlevskaia; Anthony J Sherbondy; Gayle K Deutsch; Brian A Wandell; Michal Ben-Shachar
Journal:  J Cogn Neurosci       Date:  2011-05-13       Impact factor: 3.225

Review 3.  Imaging retinotopic maps in the human brain.

Authors:  Brian A Wandell; Jonathan Winawer
Journal:  Vision Res       Date:  2010-08-06       Impact factor: 1.886

Review 4.  Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review.

Authors:  Fan Zhang; Alessandro Daducci; Yong He; Simona Schiavi; Caio Seguin; Robert E Smith; Chun-Hung Yeh; Tengda Zhao; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2022-01-01       Impact factor: 7.400

5.  Space-independent community and hub structure of functional brain networks.

Authors:  Farnaz Zamani Esfahlani; Maxwell A Bertolero; Danielle S Bassett; Richard F Betzel
Journal:  Neuroimage       Date:  2020-02-17       Impact factor: 6.556

Review 6.  Unraveling the multiscale structural organization and connectivity of the human brain: the role of diffusion MRI.

Authors:  Matteo Bastiani; Alard Roebroeck
Journal:  Front Neuroanat       Date:  2015-06-09       Impact factor: 3.856

7.  Global tractography with embedded anatomical priors for quantitative connectivity analysis.

Authors:  Alia Lemkaddem; Didrik Skiöldebrand; Alessandro Dal Palú; Jean-Philippe Thiran; Alessandro Daducci
Journal:  Front Neurol       Date:  2014-11-17       Impact factor: 4.003

8.  Evaluation and statistical inference for human connectomes.

Authors:  Franco Pestilli; Jason D Yeatman; Ariel Rokem; Kendrick N Kay; Brian A Wandell
Journal:  Nat Methods       Date:  2014-09-07       Impact factor: 28.547

9.  Microstructure Informed Tractography: Pitfalls and Open Challenges.

Authors:  Alessandro Daducci; Alessandro Dal Palú; Maxime Descoteaux; Jean-Philippe Thiran
Journal:  Front Neurosci       Date:  2016-06-06       Impact factor: 4.677

10.  Ensemble Tractography.

Authors:  Hiromasa Takemura; Cesar F Caiafa; Brian A Wandell; Franco Pestilli
Journal:  PLoS Comput Biol       Date:  2016-02-04       Impact factor: 4.475

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