Literature DB >> 20411284

AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling.

Karl-Josef Dietz1, Marc Oliver Vogel, Andrea Viehhauser.   

Abstract

To optimize acclimation responses to environmental growth conditions, plants integrate and weigh a diversity of input signals. Signal integration within the signalling networks occurs at different sites including the level of transcription factor activation. Accumulating evidence assigns a major and diversified role in environmental signal integration to the family of APETALA 2/ethylene response element binding protein (AP2/EREBP) transcription factors. Presently, the Plant Transcription Factor Database 3.0 assigns 147 gene loci to this family in Arabidopsis thaliana, 200 in Populus trichocarpa and 163 in Oryza sativa subsp. japonica as compared to 13 to 14 in unicellular algae ( http://plntfdb.bio.uni-potsdam.de/v3.0/ ). AP2/EREBP transcription factors have been implicated in hormone, sugar and redox signalling in context of abiotic stresses such as cold and drought. This review exemplarily addresses present-day knowledge of selected AP2/EREBP with focus on a function in stress signal integration and retrograde signalling and defines AP2/EREBP-linked gene networks from transcriptional profiling-based graphical Gaussian models. The latter approach suggests highly interlinked functions of AP2/EREBPs in retrograde and stress signalling.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20411284     DOI: 10.1007/s00709-010-0142-8

Source DB:  PubMed          Journal:  Protoplasma        ISSN: 0033-183X            Impact factor:   3.356


  62 in total

Review 1.  Gene networks: how to put the function in genomics.

Authors:  Paul Brazhnik; Alberto de la Fuente; Pedro Mendes
Journal:  Trends Biotechnol       Date:  2002-11       Impact factor: 19.536

2.  A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics.

Authors:  Juliane Schäfer; Korbinian Strimmer
Journal:  Stat Appl Genet Mol Biol       Date:  2005-11-14

3.  Negative regulation of the Arabidopsis homeotic gene AGAMOUS by the APETALA2 product.

Authors:  G N Drews; J L Bowman; E M Meyerowitz
Journal:  Cell       Date:  1991-06-14       Impact factor: 41.582

4.  Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.

Authors:  S J Gilmour; D G Zarka; E J Stockinger; M P Salazar; J M Houghton; M F Thomashow
Journal:  Plant J       Date:  1998-11       Impact factor: 6.417

5.  Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling.

Authors:  Hiroyuki Toh; Katsuhisa Horimoto
Journal:  Bioinformatics       Date:  2002-02       Impact factor: 6.937

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Infrastructure for the life sciences: design and implementation of the UniProt website.

Authors:  Eric Jain; Amos Bairoch; Severine Duvaud; Isabelle Phan; Nicole Redaschi; Baris E Suzek; Maria J Martin; Peter McGarvey; Elisabeth Gasteiger
Journal:  BMC Bioinformatics       Date:  2009-05-08       Impact factor: 3.169

8.  Gene networks in Arabidopsis thaliana for metabolic and environmental functions.

Authors:  Shisong Ma; Hans J Bohnert
Journal:  Mol Biosyst       Date:  2008-01-09

9.  Divergent light-, ascorbate-, and oxidative stress-dependent regulation of expression of the peroxiredoxin gene family in Arabidopsis.

Authors:  Frank Horling; Petra Lamkemeyer; Janine König; Iris Finkemeier; Andrea Kandlbinder; Margarete Baier; Karl-Josef Dietz
Journal:  Plant Physiol       Date:  2003-01       Impact factor: 8.340

10.  TINY, a dehydration-responsive element (DRE)-binding protein-like transcription factor connecting the DRE- and ethylene-responsive element-mediated signaling pathways in Arabidopsis.

Authors:  Shan Sun; Jun-Ping Yu; Feng Chen; Tong-Jin Zhao; Xiao-Hong Fang; Yi-Qin Li; Sen-Fang Sui
Journal:  J Biol Chem       Date:  2007-12-18       Impact factor: 5.157

View more
  126 in total

1.  Delta subclass HD-Zip proteins and a B-3 AP2/ERF transcription factor interact with promoter elements required for expression of the Arabidopsis cytochrome c oxidase 5b-1 gene.

Authors:  Raúl N Comelli; Elina Welchen; Hye Jin Kim; Jong Chan Hong; Daniel H Gonzalez
Journal:  Plant Mol Biol       Date:  2012-06-06       Impact factor: 4.076

Review 2.  Sexual development in Plasmodium parasites: knowing when it's time to commit.

Authors:  Gabrielle A Josling; Manuel Llinás
Journal:  Nat Rev Microbiol       Date:  2015-09       Impact factor: 60.633

Review 3.  The phytohormone crosstalk paradigm takes center stage in understanding how plants respond to abiotic stresses.

Authors:  Ajay Kohli; Nese Sreenivasulu; Prakash Lakshmanan; Prakash P Kumar
Journal:  Plant Cell Rep       Date:  2013-06-08       Impact factor: 4.570

4.  OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.

Authors:  Tânia S Serra; Duarte D Figueiredo; André M Cordeiro; Diego M Almeida; Tiago Lourenço; Isabel A Abreu; Alvaro Sebastián; Lisete Fernandes; Bruno Contreras-Moreira; M Margarida Oliveira; Nelson J M Saibo
Journal:  Plant Mol Biol       Date:  2013-05-24       Impact factor: 4.076

5.  Transcriptional and metabolic analysis of senescence induced by preventing pollination in maize.

Authors:  Rajandeep S Sekhon; Kevin L Childs; Nicholas Santoro; Cliff E Foster; C Robin Buell; Natalia de Leon; Shawn M Kaeppler
Journal:  Plant Physiol       Date:  2012-06-25       Impact factor: 8.340

6.  Expression patterns of WRKY genes in di-haploid Populus simonii × P. nigra in response to salinity stress revealed by quantitative real-time PCR and RNA sequencing.

Authors:  Shengji Wang; Jiying Wang; Wenjing Yao; Boru Zhou; Renhua Li; Tingbo Jiang
Journal:  Plant Cell Rep       Date:  2014-06-27       Impact factor: 4.570

Review 7.  The potential of transcription factor-based genetic engineering in improving crop tolerance to drought.

Authors:  Roel C Rabara; Prateek Tripathi; Paul J Rushton
Journal:  OMICS       Date:  2014-08-13

8.  Molecular characterization of cotton C-repeat/dehydration-responsive element binding factor genes that are involved in response to cold stress.

Authors:  Liu-Feng Ma; Jian-Min Zhang; Geng-Qing Huang; Yang Li; Xue-Bao Li; Yong Zheng
Journal:  Mol Biol Rep       Date:  2014-02-25       Impact factor: 2.316

Review 9.  Physiology and pathophysiology of SLC12A1/2 transporters.

Authors:  Nicolas Markadieu; Eric Delpire
Journal:  Pflugers Arch       Date:  2013-10-06       Impact factor: 3.657

10.  An ethylene response-related factor, GbERF1-like, from Gossypium barbadense improves resistance to Verticillium dahliae via activating lignin synthesis.

Authors:  Weifeng Guo; Li Jin; Yuhuan Miao; Xin He; Qin Hu; Kai Guo; Longfu Zhu; Xianlong Zhang
Journal:  Plant Mol Biol       Date:  2016-03-12       Impact factor: 4.076

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.