Literature DB >> 20392066

Photoinitiated singlet and triplet electron transfer across a redesigned [myoglobin, cytochrome b5] interface.

Judith M Nocek1, Amanda K Knutson, Peng Xiong, Nadia Petlakh Co, Brian M Hoffman.   

Abstract

We describe a strategy by which reactive binding of a weakly bound, 'dynamically docked (DD)' complex without a known structure can be strengthened electrostatically through optimized placement of surface charges, and discuss its use in modulating complex formation between myoglobin (Mb) and cytochrome b(5) (b(5)). The strategy employs paired Brownian dynamics (BD) simulations, one which monitors overall binding, the other reactive binding, to examine [X --> K] mutations on the surface of the partners, with a focus on single and multiple [D/E --> K] charge reversal mutations. This procedure has been applied to the [Mb, b(5)] complex, indicating mutations of Mb residues D44, D60, and E85 to be the most promising, with combinations of these showing a nonlinear enhancement of reactive binding. A novel method of displaying BD profiles shows that the 'hits' of b(5) on the surfaces of Mb(WT), Mb(D44K/D60K), and Mb(D44K/D60K/E85K) progressively coalesce into two 'clusters': a 'diffuse' cluster of hits that are distributed over the Mb surface and have negligible electrostatic binding energy and a 'reactive' cluster of hits with considerable stability that are localized near its heme edge, with short Fe-Fe distances favorable to electron transfer (ET). Thus, binding and reactivity progressively become correlated by the mutations. This finding relates to recent proposals that complex formation is a two-step process, proceeding through the formation of a weakly bound encounter complex to a well-defined bound complex. The design procedure has been tested through measurements of photoinitiated ET between the Zn-substituted forms of Mb(WT), Mb(D44K/D60K), and Mb(D44K/D60K/E85K) and Fe(3+)b(5). Both mutants convert the complex from the DD regime exhibited by Mb(WT), in which the transient complex is in fast kinetic exchange with its partners, k(off) >> k(et), to the slow-exchange regime, k(et) >> k(off), and both mutants exhibit rapid intracomplex ET from the triplet excited state to Fe(3+)b(5) (rate constant, k(et) approximately 10(6) s(-1)). The affinity constants of the mutant Mbs cannot be derived through conventional analysis procedures because intracomplex singlet ET quenching causes the triplet-ground absorbance difference to progressively decrease during a titration, but this effect has been incorporated into a new procedure for computing binding constants. Most importantly, these measurements reveal the presence of fast photoinduced singlet ET across the protein-protein interface, (1)k(et) approximately 2 x 10(8) s(-1).

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20392066      PMCID: PMC2868514          DOI: 10.1021/ja100499j

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  39 in total

1.  Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations.

Authors:  Raphael Guerois; Jens Erik Nielsen; Luis Serrano
Journal:  J Mol Biol       Date:  2002-07-05       Impact factor: 5.469

2.  Metmyoglobin reducing activity.

Authors:  A E D Bekhit; C Faustman
Journal:  Meat Sci       Date:  2005-07-01       Impact factor: 5.209

3.  Transition state and encounter complex for fast association of cytochrome c2 with bacterial reaction center.

Authors:  Osamu Miyashita; José N Onuchic; Melvin Y Okamura
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-01       Impact factor: 11.205

4.  Exploring the charge space of protein-protein association: a proteomic study.

Authors:  Yossi Shaul; Gideon Schreiber
Journal:  Proteins       Date:  2005-08-15

5.  Fruitful and futile encounters along the association reaction between proteins.

Authors:  Michal Harel; Alexander Spaar; Gideon Schreiber
Journal:  Biophys J       Date:  2009-05-20       Impact factor: 4.033

6.  Recessive hereditary methemoglobinemia: two novel mutations in the NADH-cytochrome b5 reductase gene.

Authors:  Elisa Fermo; Paola Bianchi; Cristina Vercellati; Anna Paola Marcello; Massimo Garatti; Ornella Marangoni; Wilma Barcellini; Alberto Zanella
Journal:  Blood Cells Mol Dis       Date:  2008-03-17       Impact factor: 3.039

7.  Myoglobin and cytochrome b5: a nuclear magnetic resonance study of a highly dynamic protein complex.

Authors:  Jonathan A R Worrall; Yijeng Liu; Peter B Crowley; Judith M Nocek; Brian M Hoffman; Marcellus Ubbink
Journal:  Biochemistry       Date:  2002-10-01       Impact factor: 3.162

Review 8.  Visualizing lowly-populated regions of the free energy landscape of macromolecular complexes by paramagnetic relaxation enhancement.

Authors:  G Marius Clore
Journal:  Mol Biosyst       Date:  2008-09-02

9.  Electrostatic redesign of the [myoglobin, cytochrome b5] interface to create a well-defined docked complex with rapid interprotein electron transfer.

Authors:  Peng Xiong; Judith M Nocek; Amanda K K Griffin; Jingyun Wang; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2009-05-27       Impact factor: 15.419

Review 10.  Fundamental aspects of protein-protein association kinetics.

Authors:  G Schreiber; G Haran; H-X Zhou
Journal:  Chem Rev       Date:  2009-03-11       Impact factor: 60.622

View more
  10 in total

1.  Faster interprotein electron transfer in a [myoglobin, b⁵] complex with a redesigned interface.

Authors:  Peng Xiong; Judith M Nocek; Josh Vura-Weis; Jenny V Lockard; Michael R Wasielewski; Brian M Hoffman
Journal:  Science       Date:  2010-11-19       Impact factor: 47.728

2.  Charge-Disproportionation Symmetry Breaking Creates a Heterodimeric Myoglobin Complex with Enhanced Affinity and Rapid Intracomplex Electron Transfer.

Authors:  Ethan N Trana; Judith M Nocek; Jon Vander Woude; Ingrid Span; Stephen M Smith; Amy C Rosenzweig; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2016-09-20       Impact factor: 15.419

3.  Mechanism of Nitric Oxide Synthase Regulation: Electron Transfer and Interdomain Interactions.

Authors:  Changjian Feng
Journal:  Coord Chem Rev       Date:  2011-10-17       Impact factor: 22.315

4.  Evolving the [myoglobin, cytochrome b(5)] complex from dynamic toward simple docking: charging the electron transfer reactive patch.

Authors:  Ethan N Trana; Judith M Nocek; Amanda K Knutson; Brian M Hoffman
Journal:  Biochemistry       Date:  2012-10-15       Impact factor: 3.162

5.  Evidence for Functionally Relevant Encounter Complexes in Nitrogenase Catalysis.

Authors:  Cedric P Owens; Faith E H Katz; Cole H Carter; Maria A Luca; F Akif Tezcan
Journal:  J Am Chem Soc       Date:  2015-09-24       Impact factor: 15.419

6.  Tryptophan-accelerated electron flow across a protein-protein interface.

Authors:  Kana Takematsu; Heather Williamson; Ana María Blanco-Rodríguez; Lucie Sokolová; Pavle Nikolovski; Jens T Kaiser; Michael Towrie; Ian P Clark; Antonín Vlček; Jay R Winkler; Harry B Gray
Journal:  J Am Chem Soc       Date:  2013-10-02       Impact factor: 15.419

7.  Interfacial hydration, dynamics and electron transfer: multi-scale ET modeling of the transient [myoglobin, cytochrome b5] complex.

Authors:  Shahar Keinan; Judith M Nocek; Brian M Hoffman; David N Beratan
Journal:  Phys Chem Chem Phys       Date:  2012-09-07       Impact factor: 3.676

8.  The complex of cytochrome f and plastocyanin from Nostoc sp. PCC 7119 is highly dynamic.

Authors:  Sandra Scanu; Johannes Förster; Michela G Finiguerra; Maryam Hashemi Shabestari; Martina Huber; Marcellus Ubbink
Journal:  Chembiochem       Date:  2012-05-22       Impact factor: 3.164

9.  A Designed Metalloenzyme Achieving the Catalytic Rate of a Native Enzyme.

Authors:  Yang Yu; Chang Cui; Xiaohong Liu; Igor D Petrik; Jiangyun Wang; Yi Lu
Journal:  J Am Chem Soc       Date:  2015-09-08       Impact factor: 15.419

10.  Symmetrized photoinitiated electron flow within the [myoglobin:cytochrome b₅] complex on singlet and triplet time scales: energetics vs dynamics.

Authors:  Nadia Petlakh Co; Ryan M Young; Amanda L Smeigh; Michael R Wasielewski; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2014-08-29       Impact factor: 15.419

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.