Literature DB >> 20388839

High-resolution cardiovascular function confirms functional orthology of myocardial contractility pathways in zebrafish.

Jordan T Shin1, Eugene V Pomerantsev, John D Mably, Calum A MacRae.   

Abstract

Phenotype-driven screens in larval zebrafish have transformed our understanding of the molecular basis of cardiovascular development. Screens to define the genetic determinants of physiological phenotypes have been slow to materialize as a result of the limited number of validated in vivo assays with relevant dynamic range. To enable rigorous assessment of cardiovascular physiology in living zebrafish embryos, we developed a suite of software tools for the analysis of high-speed video microscopic images and validated these, using established cardiomyopathy models in zebrafish as well as modulation of the nitric oxide (NO) pathway. Quantitative analysis in wild-type fish exposed to NO or in a zebrafish model of dilated cardiomyopathy demonstrated that these tools detect significant differences in ventricular chamber size, ventricular performance, and aortic flow velocity in zebrafish embryos across a large dynamic range. These methods also were able to establish the effects of the classic pharmacological agents isoproterenol, ouabain, and verapamil on cardiovascular physiology in zebrafish embryos. Sequence conservation between zebrafish and mammals of key amino acids in the pharmacological targets of these agents correlated with the functional orthology of the physiological response. These data provide evidence that the quantitative evaluation of subtle physiological differences in zebrafish can be accomplished at a resolution and with a dynamic range comparable to those achieved in mammals and provides a mechanism for genetic and small-molecule dissection of functional pathways in this model organism.

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Year:  2010        PMID: 20388839      PMCID: PMC3032279          DOI: 10.1152/physiolgenomics.00206.2009

Source DB:  PubMed          Journal:  Physiol Genomics        ISSN: 1094-8341            Impact factor:   3.107


  36 in total

1.  Growth and function of the embryonic heart depend upon the cardiac-specific L-type calcium channel alpha1 subunit.

Authors:  W Rottbauer; K Baker; Z G Wo; M A Mohideen; H F Cantiello; M C Fishman
Journal:  Dev Cell       Date:  2001-08       Impact factor: 12.270

2.  Partitioning of tissue expression accompanies multiple duplications of the Na+/K+ ATPase alpha subunit gene.

Authors:  F C Serluca; A Sidow; J D Mably; M C Fishman
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

3.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Authors:  Kazutaka Katoh; Kazuharu Misawa; Kei-ichi Kuma; Takashi Miyata
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

4.  Intracardiac fluid forces are an essential epigenetic factor for embryonic cardiogenesis.

Authors:  Jay R Hove; Reinhard W Köster; Arian S Forouhar; Gabriel Acevedo-Bolton; Scott E Fraser; Morteza Gharib
Journal:  Nature       Date:  2003-01-09       Impact factor: 49.962

5.  Assessment of zebrafish cardiac performance using Doppler echocardiography and power angiography.

Authors:  Yi-Lwun Ho; Yio-Wha Shau; Huai-Jen Tsai; Lung-Chun Lin; Por-Jau Huang; Fon-Jou Hsieh
Journal:  Ultrasound Med Biol       Date:  2002-09       Impact factor: 2.998

6.  Cardiomyopathy in zebrafish due to mutation in an alternatively spliced exon of titin.

Authors:  Xiaolei Xu; Steffen E Meiler; Tao P Zhong; Manzoor Mohideen; Dane A Crossley; Warren W Burggren; Mark C Fishman
Journal:  Nat Genet       Date:  2002-01-14       Impact factor: 38.330

7.  Nitric oxide and vascular reactivity in developing zebrafish, Danio rerio.

Authors:  R Fritsche; T Schwerte; B Pelster
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2000-12       Impact factor: 3.619

8.  Cardiac troponin T is essential in sarcomere assembly and cardiac contractility.

Authors:  Amy J Sehnert; Anja Huq; Brant M Weinstein; Charline Walker; Mark Fishman; Didier Y R Stainier
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

9.  Drugs that induce repolarization abnormalities cause bradycardia in zebrafish.

Authors:  David J Milan; Travis A Peterson; Jeremy N Ruskin; Randall T Peterson; Calum A MacRae
Journal:  Circulation       Date:  2003-03-18       Impact factor: 29.690

10.  Digital motion analysis as a tool for analysing the shape and performance of the circulatory system in transparent animals.

Authors:  T Schwerte; B Pelster
Journal:  J Exp Biol       Date:  2000-06       Impact factor: 3.312

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  31 in total

Review 1.  Optical mapping in the developing zebrafish heart.

Authors:  M Khaled Sabeh; Hussein Kekhia; Calum A Macrae
Journal:  Pediatr Cardiol       Date:  2012-03-30       Impact factor: 1.655

2.  Novel cardiovascular gene functions revealed via systematic phenotype prediction in zebrafish.

Authors:  Gabriel Musso; Murat Tasan; Christian Mosimann; John E Beaver; Eva Plovie; Logan A Carr; Hon Nian Chua; Julie Dunham; Khalid Zuberi; Harold Rodriguez; Quaid Morris; Leonard Zon; Frederick P Roth; Calum A MacRae
Journal:  Development       Date:  2014-01       Impact factor: 6.868

3.  A study of the adult zebrafish ventricular function by retrospective Doppler-gated ultrahigh-frame-rate echocardiography.

Authors:  Ting-Yu Liu; Po-Yang Lee; Chih-Chung Huang; Lei Sun; K Kirk Shung
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2013-09       Impact factor: 2.725

Review 4.  Developing zebrafish disease models for in vivo small molecule screens.

Authors:  Pui-Ying Lam; Randall T Peterson
Journal:  Curr Opin Chem Biol       Date:  2019-03-28       Impact factor: 8.822

5.  Identification of a new modulator of the intercalated disc in a zebrafish model of arrhythmogenic cardiomyopathy.

Authors:  Angeliki Asimaki; Sudhir Kapoor; Eva Plovie; Anne Karin Arndt; Edward Adams; ZhenZhen Liu; Cynthia A James; Daniel P Judge; Hugh Calkins; Jared Churko; Joseph C Wu; Calum A MacRae; André G Kléber; Jeffrey E Saffitz
Journal:  Sci Transl Med       Date:  2014-06-11       Impact factor: 17.956

6.  Genome-wide studies of copy number variation and exome sequencing identify rare variants in BAG3 as a cause of dilated cardiomyopathy.

Authors:  Nadine Norton; Duanxiang Li; Mark J Rieder; Jill D Siegfried; Evadnie Rampersaud; Stephan Züchner; Steve Mangos; Jorge Gonzalez-Quintana; Libin Wang; Sean McGee; Jochen Reiser; Eden Martin; Deborah A Nickerson; Ray E Hershberger
Journal:  Am J Hum Genet       Date:  2011-02-25       Impact factor: 11.025

7.  Human amyloidogenic light chain proteins result in cardiac dysfunction, cell death, and early mortality in zebrafish.

Authors:  Shikha Mishra; Jian Guan; Eva Plovie; David C Seldin; Lawreen H Connors; Giampaolo Merlini; Rodney H Falk; Calum A MacRae; Ronglih Liao
Journal:  Am J Physiol Heart Circ Physiol       Date:  2013-04-26       Impact factor: 4.733

8.  Cardiac Arrhythmia: In vivo screening in the zebrafish to overcome complexity in drug discovery.

Authors:  Calum A Macrae
Journal:  Expert Opin Drug Discov       Date:  2010-07       Impact factor: 6.098

9.  Pharmacological HIF2α inhibition improves VHL disease-associated phenotypes in zebrafish model.

Authors:  Ana Martins Metelo; Haley R Noonan; Xiang Li; Youngnam Jin; Rania Baker; Lee Kamentsky; Yiyun Zhang; Ellen van Rooijen; Jordan Shin; Anne E Carpenter; Jing-Ruey Yeh; Randall T Peterson; Othon Iliopoulos
Journal:  J Clin Invest       Date:  2015-04-13       Impact factor: 14.808

Review 10.  Zebrafish as tools for drug discovery.

Authors:  Calum A MacRae; Randall T Peterson
Journal:  Nat Rev Drug Discov       Date:  2015-09-11       Impact factor: 84.694

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