Literature DB >> 20383653

Blind prediction test of free energies of hydration with COSMO-RS.

Andreas Klamt1, Michael Diedenhofen.   

Abstract

The COSMO-RS method, a combination of the quantum chemical dielectric continuum solvation model COSMO with COSMO-RS, a statistical thermodynamics treatment of surface interactions, simulations, has been used for the direct, blind prediction of free energies of hydration within the SAMPL challenge. Straight application of the latest version of the COSMOtherm implementation in combination with a rigorous conformational sampling yielded a predictive accuracy of 1.56 kcal/mol (RMSE) for the 23 compounds of the blind prediction dataset. Due to the uncertainties of the extrapolations and assumptions involved in the derivation of the experimental data, the accuracy of the predicted data may be considered to be within the noise level of the experimental data.

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Year:  2010        PMID: 20383653     DOI: 10.1007/s10822-010-9354-4

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  5 in total

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Journal:  Acc Chem Res       Date:  2009-04-21       Impact factor: 22.384

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Journal:  J Phys Chem B       Date:  2009-04-09       Impact factor: 2.991

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5.  Density-functional exchange-energy approximation with correct asymptotic behavior.

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  5 in total
  9 in total

1.  Prediction of free energies of hydration with COSMO-RS on the SAMPL3 data set.

Authors:  Jens Reinisch; Andreas Klamt; Michael Diedenhofen
Journal:  J Comput Aided Mol Des       Date:  2012-05-13       Impact factor: 3.686

2.  Quantum chemical studies of nucleic acids: can we construct a bridge to the RNA structural biology and bioinformatics communities?

Authors:  Jiří Šponer; Judit E Šponer; Anton I Petrov; Neocles B Leontis
Journal:  J Phys Chem B       Date:  2010-11-04       Impact factor: 2.991

3.  Predicting hydration free energies with a hybrid QM/MM approach: an evaluation of implicit and explicit solvation models in SAMPL4.

Authors:  Gerhard König; Frank C Pickard; Ye Mei; Bernard R Brooks
Journal:  J Comput Aided Mol Des       Date:  2014-02-07       Impact factor: 3.686

4.  Prediction of free energies of hydration with COSMO-RS on the SAMPL4 data set.

Authors:  Jens Reinisch; Andreas Klamt
Journal:  J Comput Aided Mol Des       Date:  2014-01-14       Impact factor: 3.686

5.  Prediction of cyclohexane-water distribution coefficients with COSMO-RS on the SAMPL5 data set.

Authors:  Andreas Klamt; Frank Eckert; Jens Reinisch; Karin Wichmann
Journal:  J Comput Aided Mol Des       Date:  2016-07-26       Impact factor: 3.686

6.  Calculating distribution coefficients based on multi-scale free energy simulations: an evaluation of MM and QM/MM explicit solvent simulations of water-cyclohexane transfer in the SAMPL5 challenge.

Authors:  Gerhard König; Frank C Pickard; Jing Huang; Andrew C Simmonett; Florentina Tofoleanu; Juyong Lee; Pavlo O Dral; Samarjeet Prasad; Michael Jones; Yihan Shao; Walter Thiel; Bernard R Brooks
Journal:  J Comput Aided Mol Des       Date:  2016-08-30       Impact factor: 3.686

7.  An efficient protocol for obtaining accurate hydration free energies using quantum chemistry and reweighting from molecular dynamics simulations.

Authors:  Frank C Pickard; Gerhard König; Andrew C Simmonett; Yihan Shao; Bernard R Brooks
Journal:  Bioorg Med Chem       Date:  2016-08-22       Impact factor: 3.641

8.  Bayesian Model Averaging for Ensemble-Based Estimates of Solvation-Free Energies.

Authors:  Luke J Gosink; Christopher C Overall; Sarah M Reehl; Paul D Whitney; David L Mobley; Nathan A Baker
Journal:  J Phys Chem B       Date:  2017-01-04       Impact factor: 2.991

9.  Detection of tautomer proportions of dimedone in solution: a new approach based on theoretical and FT-IR viewpoint.

Authors:  Sedat Karabulut; Hilmi Namli; Jerzy Leszczynski
Journal:  J Comput Aided Mol Des       Date:  2013-08-07       Impact factor: 3.686

  9 in total

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