Literature DB >> 2038059

The phage 434 Cro/OR1 complex at 2.5 A resolution.

A Mondragón1, S C Harrison.   

Abstract

The crystal structure of phage 434 Cro protein in complex with a 20 base-pair DNA fragment has been determined to 2.5 A resolution. The DNA fragment contains the sequence of the OR1 operator site. The structure shows a bent conformation for the DNA, straighter at the center and more bent at the ends. The central base-pairs adopt conformations with significant deviations from coplanarity. The two molecules interact extensively along their common interface, both through hydrogen bonds and van der Waals interactions. The significance of these interactions for operator binding and recognition is discussed.

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Year:  1991        PMID: 2038059     DOI: 10.1016/0022-2836(91)90568-q

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  42 in total

1.  The structural basis for the oriented assembly of a TBP/TFB/promoter complex.

Authors:  O Littlefield; Y Korkhin; P B Sigler
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Quorum sensing in Vibrio fischeri: analysis of the LuxR DNA binding region by alanine-scanning mutagenesis.

Authors:  K A Egland; E P Greenberg
Journal:  J Bacteriol       Date:  2001-01       Impact factor: 3.490

3.  Regulatory responses of the adaptive response to alkylation damage: a simple regulon with complex regulatory features.

Authors:  P Landini; M R Volkert
Journal:  J Bacteriol       Date:  2000-12       Impact factor: 3.490

4.  Determining binding sites in protein-nucleic acid complexes by cross-saturation.

Authors:  A N Lane; G Kelly; A Ramos; T A Frenkiel
Journal:  J Biomol NMR       Date:  2001-10       Impact factor: 2.835

5.  Retroevolution of lambda Cro toward a stable monomer.

Authors:  Kelly R LeFevre; Matthew H J Cordes
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-21       Impact factor: 11.205

6.  Solution structure and DNA binding of the effector domain from the global regulator PrrA (RegA) from Rhodobacter sphaeroides: insights into DNA binding specificity.

Authors:  Cédric Laguri; Mary K Phillips-Jones; Michael P Williamson
Journal:  Nucleic Acids Res       Date:  2003-12-01       Impact factor: 16.971

7.  Combinatorial redesign of the DNA binding specificity of a prokaryotic helix-turn-helix repressor.

Authors:  Katja Fromknecht; Pia D Vogel; John G Wise
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

8.  Thermodynamics of Cro protein-DNA interactions.

Authors:  Y Takeda; P D Ross; C P Mudd
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-01       Impact factor: 11.205

9.  The Escherichia coli Ada protein can interact with two distinct determinants in the sigma70 subunit of RNA polymerase according to promoter architecture: identification of the target of Ada activation at the alkA promoter.

Authors:  P Landini; S J Busby
Journal:  J Bacteriol       Date:  1999-03       Impact factor: 3.490

10.  Structure of peptide sex pheromone receptor PrgX and PrgX/pheromone complexes and regulation of conjugation in Enterococcus faecalis.

Authors:  Ke Shi; C Kent Brown; Zu-Yi Gu; Briana K Kozlowicz; Gary M Dunny; Douglas H Ohlendorf; Cathleen A Earhart
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-08       Impact factor: 11.205

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