Literature DB >> 20364360

Annular tautomerism: experimental observations and quantum mechanics calculations.

Aurora J Cruz-Cabeza1, Adrian Schreyer, William R Pitt.   

Abstract

The use of MP2 level quantum mechanical (QM) calculations on isolated heteroaromatic ring systems for the prediction of the tautomeric propensities of whole molecules in a crystalline environment was examined. A Polarisable Continuum Model was used in the calculations to account for environment effects on the tautomeric relative stabilities. The calculated relative energies of tautomers were compared to relative abundances within the Cambridge Structural Database (CSD) and the Protein Data Bank (PDB). The work was focussed on 84 annular tautomeric forms of 34 common ring systems. Good agreement was found between the calculations and the experimental data even if the quantity of these data was limited in many cases. The QM results were compared to those produced by much faster semiempirical calculations. In a search for other sources of the useful experimental data, the relative numbers of known compounds in which prototropic positions were often substituted by heavy atoms were also analysed. A scheme which groups all annular tautomeric transformations into 10 classes was developed. The scheme was designed to encompass a comprehensive set of known and theoretically possible tautomeric ring systems generated as part of a previous study. General trends across analogous ring systems were detected as a result. The calculations and statistics collected on crystallographic data as well as the general trends observed should be useful for the better modelling of annular tautomerism in the applications such as computer-aided drug design, small molecule crystal structure prediction, the naming of compounds and the interpretation of protein-small molecule crystal structures.

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Year:  2010        PMID: 20364360     DOI: 10.1007/s10822-010-9345-5

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  12 in total

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Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

3.  New software for searching the Cambridge Structural Database and visualizing crystal structures.

Authors:  Ian J Bruno; Jason C Cole; Paul R Edgington; Magnus Kessler; Clare F Macrae; Patrick McCabe; Jonathan Pearson; Robin Taylor
Journal:  Acta Crystallogr B       Date:  2002-05-29

Review 4.  PROTOTROPIC TAUTOMERISM OF HETEROAROMATIC COMPOUNDS. 3. FIVE-MEMBERED RINGS AND ONE HETERO ATOM.

Authors:  A R KATRIZKY; J M LAGOWSKI
Journal:  Adv Heterocycl Chem       Date:  1963       Impact factor: 3.552

Review 5.  PROTOTROPIC TAUTOMERISM OF HETEROAROMATIC COMPOUNDS. IV. FIVE-MEMBERED RINGS WITH TWO OR MORE HETERO ATOMS.

Authors:  A R KATRITZKY; J M LAGOWSKI
Journal:  Adv Heterocycl Chem       Date:  1963       Impact factor: 3.552

6.  CREDO: a protein-ligand interaction database for drug discovery.

Authors:  Adrian Schreyer; Tom Blundell
Journal:  Chem Biol Drug Des       Date:  2009-02       Impact factor: 2.817

7.  Heteroaromatic rings of the future.

Authors:  William R Pitt; David M Parry; Benjamin G Perry; Colin R Groom
Journal:  J Med Chem       Date:  2009-05-14       Impact factor: 7.446

8.  SCOP: a structural classification of proteins database for the investigation of sequences and structures.

Authors:  A G Murzin; S E Brenner; T Hubbard; C Chothia
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

9.  The Universal Protein Resource (UniProt).

Authors:  Amos Bairoch; Rolf Apweiler; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

10.  Let's not forget tautomers.

Authors:  Yvonne Connolly Martin
Journal:  J Comput Aided Mol Des       Date:  2009-10       Impact factor: 3.686

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Journal:  J Comput Aided Mol Des       Date:  2010-04-06       Impact factor: 3.686

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Journal:  J Comput Aided Mol Des       Date:  2010-09-30       Impact factor: 3.686

3.  Tautomerism of Warfarin: Combined Chemoinformatics, Quantum Chemical, and NMR Investigation.

Authors:  Laura Guasch; Megan L Peach; Marc C Nicklaus
Journal:  J Org Chem       Date:  2015-09-25       Impact factor: 4.354

4.  Detection of tautomer proportions of dimedone in solution: a new approach based on theoretical and FT-IR viewpoint.

Authors:  Sedat Karabulut; Hilmi Namli; Jerzy Leszczynski
Journal:  J Comput Aided Mol Des       Date:  2013-08-07       Impact factor: 3.686

5.  Pattern-free generation and quantum mechanical scoring of ring-chain tautomers.

Authors:  Daniel S Levine; Mark A Watson; Leif D Jacobson; Claire E Dickerson; Haoyu S Yu; Art D Bochevarov
Journal:  J Comput Aided Mol Des       Date:  2020-08-24       Impact factor: 3.686

  5 in total

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