Literature DB >> 20364326

The complete mitochondrial genome of Thrinchus schrenkii (Orthoptera: Caelifera, Acridoidea, Pamphagidae).

Daochuan Zhang1, Yongchao Zhi, Hong Yin, Xinjiang Li, Xiangchu Yin.   

Abstract

Complete nucleotide sequences of mitochondrial genome (mitogenome) of Thrinchus schrenkii (Orthoptera: Acridoidea: Pamphagidae) were determined. It is 15672 bp in length and contains 71.2% A+T. All T. schrenkii protein-coding sequences except for the cytochrome oxidase subunit I (COI) start with a typical ATN codon. Instead, CCG, which is a rare but possible initiation codon, is located at the initiation context of COI. The usual termination codons (TAA and TAG) were found from 12 PCGs. However, the ND5 had incomplete termination codon (T). All tRNA genes could be folded into the typical cloverleaf secondary structure, excluding tRNASer(AGN) which forms another structure according to the Steinberg-Cedergren tertiary structure. The sizes of the large and small ribosomal RNA genes are 1319 and 848 bp, respectively. The A+T content of the A+T-rich region is 78.7%, which is the lowest among the known mitogenome of Acridoidea.

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Year:  2010        PMID: 20364326     DOI: 10.1007/s11033-010-0147-6

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  27 in total

1.  The mitochondrial genome of the primary screwworm fly Cochliomyia hominivorax (Diptera: Calliphoridae).

Authors:  A C Lessinger; A C Martins Junqueira; T A Lemos; E L Kemper; F R da Silva; A L Vettore; P Arruda; A M Azeredo-Espin
Journal:  Insect Mol Biol       Date:  2000-10       Impact factor: 3.585

2.  Combined molecular phylogenetic analysis of the Orthoptera (Arthropoda, Insecta) and implications for their higher systematics.

Authors:  P K Flook; S Klee; C H Rowell
Journal:  Syst Biol       Date:  1999-06       Impact factor: 15.683

3.  [Molecular phylogeny of some species of the acridoidea based on 16S rDNA].

Authors:  Hong Yin; Dao-Chuan Zhang; Zhi-Li Bi; Zhan Yin; Yong Liu; Xiang-Chu Yin
Journal:  Yi Chuan Xue Bao       Date:  2003-08

4.  Multiple sequence alignment with the Clustal series of programs.

Authors:  Ramu Chenna; Hideaki Sugawara; Tadashi Koike; Rodrigo Lopez; Toby J Gibson; Desmond G Higgins; Julie D Thompson
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Comparative genomics of mitochondrial DNA in members of the Drosophila melanogaster subgroup.

Authors:  J W Ballard
Journal:  J Mol Evol       Date:  2000-07       Impact factor: 2.395

7.  The complete nucleotide sequence and gene organization of the mitochondrial genome of the oriental mole cricket, Gryllotalpa orientalis (Orthoptera: Gryllotalpidae).

Authors:  Iksoo Kim; So Young Cha; Myung Hee Yoon; Jae Sam Hwang; Sang Mong Lee; Hung Dae Sohn; Byung Rae Jin
Journal:  Gene       Date:  2005-07-04       Impact factor: 3.688

8.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

9.  The mitochondrial genome of the mediterranean fruit fly, Ceratitis capitata.

Authors:  L Spanos; G Koutroumbas; M Kotsyfakis; C Louis
Journal:  Insect Mol Biol       Date:  2000-04       Impact factor: 3.585

10.  Phylogenetic and genomic analysis of the complete mitochondrial DNA sequence of the spotted asparagus beetle Crioceris duodecimpunctata.

Authors:  James Bruce Stewart; Andrew T Beckenbach
Journal:  Mol Phylogenet Evol       Date:  2003-03       Impact factor: 4.286

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