Literature DB >> 20364290

Control of genic DNA methylation in Arabidopsis.

Soichi Inagaki1, Tetsuji Kakutani.   

Abstract

Detailed features of genomic DNA methylation have been revealed by recent genome-wide analyses on several model organisms. An unexpected feature conserved among plants and some animals is the presence of DNA methylation within transcribed genes. For understanding the controlling mechanisms of the enigmatic genic methylation, genetic and genomic approaches using Arabidopsis may be effective.

Entities:  

Mesh：

Year:  2010        PMID： 20364290     DOI： 10.1007/s10265-010-0338-1

Source DB:  PubMed          Journal:  J Plant Res        ISSN： 0918-9440            Impact factor:   2.629


  40 in total

1.  CpG methylation is targeted to transcription units in an invertebrate genome.

Authors:  Miho M Suzuki; Alastair R W Kerr; Dina De Sousa; Adrian Bird
Journal:  Genome Res       Date:  2007-04-09       Impact factor: 9.043

2.  Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.

Authors:  Michael J Carrozza; Bing Li; Laurence Florens; Tamaki Suganuma; Selene K Swanson; Kenneth K Lee; Wei-Jong Shia; Scott Anderson; John Yates; Michael P Washburn; Jerry L Workman
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

3.  Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex.

Authors:  Michael-Christopher Keogh; Siavash K Kurdistani; Stephanie A Morris; Seong Hoon Ahn; Vladimir Podolny; Sean R Collins; Maya Schuldiner; Kayu Chin; Thanuja Punna; Natalie J Thompson; Charles Boone; Andrew Emili; Jonathan S Weissman; Timothy R Hughes; Brian D Strahl; Michael Grunstein; Jack F Greenblatt; Stephen Buratowski; Nevan J Krogan
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

4.  Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis.

Authors:  A Miura; S Yonebayashi; K Watanabe; T Toyama; H Shimada; T Kakutani
Journal:  Nature       Date:  2001-05-10       Impact factor: 49.962

Review 5.  Cytosine methylation and the ecology of intragenomic parasites.

Authors:  J A Yoder; C P Walsh; T H Bestor
Journal:  Trends Genet       Date:  1997-08       Impact factor: 11.639

6.  Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana.

Authors:  Hidetoshi Saze; Akiko Shiraishi; Asuka Miura; Tetsuji Kakutani
Journal:  Science       Date:  2008-01-25       Impact factor: 47.728

7.  Bursts of retrotransposition reproduced in Arabidopsis.

Authors:  Sayuri Tsukahara; Akie Kobayashi; Akira Kawabe; Olivier Mathieu; Asuka Miura; Tetsuji Kakutani
Journal:  Nature       Date:  2009-09-06       Impact factor: 49.962

8.  Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells.

Authors:  Madeleine P Ball; Jin Billy Li; Yuan Gao; Je-Hyuk Lee; Emily M LeProust; In-Hyun Park; Bin Xie; George Q Daley; George M Church
Journal:  Nat Biotechnol       Date:  2009-03-29       Impact factor: 54.908

9.  DNA methylation profiling of human chromosomes 6, 20 and 22.

Authors:  Florian Eckhardt; Joern Lewin; Rene Cortese; Vardhman K Rakyan; John Attwood; Matthias Burger; John Burton; Tony V Cox; Rob Davies; Thomas A Down; Carolina Haefliger; Roger Horton; Kevin Howe; David K Jackson; Jan Kunde; Christoph Koenig; Jennifer Liddle; David Niblett; Thomas Otto; Roger Pettett; Stefanie Seemann; Christian Thompson; Tony West; Jane Rogers; Alex Olek; Kurt Berlin; Stephan Beck
Journal:  Nat Genet       Date:  2006-10-29       Impact factor: 38.330

10.  The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana.

Authors:  Felipe F Aceituno; Nick Moseyko; Seung Y Rhee; Rodrigo A Gutiérrez
Journal:  BMC Genomics       Date:  2008-09-23       Impact factor: 3.969
View more
  7 in total

1.  Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes.

Authors:  Xi-liang Wang; Shu-hui Song; Yong-Sheng Wu; Yu-Li Li; Ting-ting Chen; Zhi-yuan Huang; Shuo Liu; Thomas L Dunwell; Gerd P Pfeifer; Jim M Dunwell; Raheema Wamaedeesa; Ihsan Ullah; Yinsheng Wang; Song-nian Hu
Journal:  J Exp Bot       Date:  2015-08-13       Impact factor: 6.992

Review 2.  siRNA-mediated DNA methylation and H3K9 dimethylation in plants.

Authors:  Chi Xu; Jing Tian; Beixin Mo
Journal:  Protein Cell       Date:  2013-08-13       Impact factor: 14.870

3.  Epigenetic switches of tobacco transgenes associate with transient redistribution of histone marks in callus culture.

Authors:  Kateřina Křížová; Ann Depicker; Aleš Kovařík
Journal:  Epigenetics       Date:  2013-04-26       Impact factor: 4.528

4.  Atypical DNA methylation of genes encoding cysteine-rich peptides in Arabidopsis thaliana.

Authors:  Wanhui You; Agata Tyczewska; Matthew Spencer; Lucia Daxinger; Marc W Schmid; Ueli Grossniklaus; Stacey A Simon; Blake C Meyers; Antonius J M Matzke; Marjori Matzke
Journal:  BMC Plant Biol       Date:  2012-04-19       Impact factor: 4.215

Review 5.  Functional ultrastructure of the plant nucleolus.

Authors:  Dariusz Stępiński
Journal:  Protoplasma       Date:  2014-04-23       Impact factor: 3.356

6.  Analysis of Argonaute 4-Associated Long Non-Coding RNA in Arabidopsis thaliana Sheds Novel Insights into Gene Regulation through RNA-Directed DNA Methylation.

Authors:  Phil Chi Khang Au; Elizabeth S Dennis; Ming-Bo Wang
Journal:  Genes (Basel)       Date:  2017-08-07       Impact factor: 4.096

7.  Deposition of histone variant H2A.Z within gene bodies regulates responsive genes.

Authors:  Devin Coleman-Derr; Daniel Zilberman
Journal:  PLoS Genet       Date:  2012-10-11       Impact factor: 5.917
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.