| Literature DB >> 20359516 |
Kelvin Yuen Kwong Chan1, Mei-Shu Xu, Johannes Chi Yun Ching, Thomas Man Kit So, Sik-To Lai, Chung-Ming Chu, Loretta Y C Yam, Andrew T Y Wong, Pui Hong Chung, Vera Sau Fong Chan, Chen Lung Steve Lin, Pak Chung Sham, Gabriel M Leung, Joseph S M Peiris, Ui-Soon Khoo.
Abstract
CD209 (DC-SIGN) is an important C-type lectin which acts a receptor of many pathogens. The single nucleotide polymorphism (SNP) -336A>G in the CD209 promoter has been demonstrated to regulate promoter activity and to be associated with several important infectious diseases, such as human immunodeficiency virus-1 (HIV-1), Mycobacterium tuberculosis, and Dengue fever. CD209 facilitates severe acute respiratory syndrome (SARS)-coronavirus spike protein-bearing pseudotype driven infection of permissive cells in vitro. In keeping with previously published findings, our in vitro studies confirmed that this SNP modulates gene promoter activity. Genetic association analysis of this SNP with clinico-pathologic outcomes in 824 serologic confirmed SARS patients showed that the -336AG/GG genotype SARS patients was associated with lower standardized lactate-dehydrogenase (LDH) levels compared with the -336AA patients (p = 0.014, odds ratio = 0.40). High LDH levels are known to be an independent predictor for poor clinical outcome, probably related to tissue destruction from immune hyperactivity. Hence, SARS patients with the CD209 -336 AA genotype carry a 60% chance of having a poorer prognosis. This association is in keeping with the role of CD209 in modulating immune response to viral infection. The relevance of these findings for other infectious diseases and inflammatory conditions would be worth investigating. Copyright 2010 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved.Entities:
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Year: 2010 PMID: 20359516 PMCID: PMC7115401 DOI: 10.1016/j.humimm.2010.03.006
Source DB: PubMed Journal: Hum Immunol ISSN: 0198-8859 Impact factor: 2.850
Fig. 1EMSA of Sp1 consensus, AP2 consensus, CD209 −336A and −336G probes using HeLa nuclear extract. (Upper panel) Up-shifted bands are indicated by the arrow. Upshifted bands could be competed by respective cold competitor probes. (Lower panel) Relative intensity of upshifted bands was plotted. *Band intensity in lane 3 was used to normalize against that in lane 2; **band intensity in lane 6 was used to normalize against that in lane 5; ***band intensity in lane 12 was used to normalize against those in lanes 8–11 and 14–18); hence Lanes 3, 6, and 12 were assigned an arbitrary relative value of 1. Bars indicate standard deviation.
Fig. 2Standardized LDH levels on admission of SARS patients. Identification of cutoff value for higher and lower standardized LDH levels. Black dots indicate standardized LDH level of the corresponding SARS patients.
CD209 −336A>G genotype and allele frequencies against standardized LDH levels on admission of SARS patients
| Lower LDH level | Higher LDH level | OR (95% CI) | ||
|---|---|---|---|---|
| Genotype | ||||
| AA | 477 (81.5%) | 88 (91.7%) | ||
| AG | 105 (18.0%) | 8 (8.3%) | ||
| GG | 3 (0.5%) | 0 (0%) | ||
| G-negative (AA) | 477 (81.5%) | 88 (91.7%) | Reference | |
| G-positive (AG/GG) | 108 (18.5%) | 8 (8.3%) | ||
| Allele | ||||
| A | 1059 (90.5%) | 184 (95.8%) | Reference | |
| G | 111 (9.5%) | 8 (4.2%) |
CI, confidence interval; OR, odds ratio.
Lower LDH levels: standardized LDH levels on admission that were less than cutoff value of 1.6.
Higher LDH levels: standardized LDH levels on admission that were more than the cutoff.
χ2 test, df = 1 unless otherwise indicated.
p Value for overall genotypes, df = 2. Boldface values indicate significant results (p < 0.05).
Fig. 3Mean standardized LDH level on admission of the combined genotype of ICAM3 +443A>G and CD209 −336A>G SNPs
Mean ± SEM of standardized LDH level of each of the combined genotypes are shown.
Mann-Whitney test. Boldface p value indicates significant finding in the comparison of +443GG/−336AA versus the reference +443AA/−336AA.
Analysis of distribution of combined ICAM3/CD209 genotypes against standardized LDH levels in combined genotype analysis and logistic regression analysis adjusted for age and gender
| ICAM3 +443A>G (Asp143Gly) | CD209 −336A>G | Lower LDH level | Higher LDH level | OR (95% CI) | |
|---|---|---|---|---|---|
| Combined genotype | Total = 582 | Total = 95 | |||
| AA | AA | 377 (64.8%) | 62 (65.3%) | — | Reference |
| AA | AG | 89 (15.3%) | 6 (6.3%) | ||
| AA | GG | 3 (0.5%) | 0 (0%) | 1.00 | — |
| AG | AA | 90 (15.4%) | 20 (21.0%) | 0.286 | 1.35 (0.78–2.35) |
| AG | AG | 15 (2.6%) | 2 (2.1%) | 1.00 | — |
| GG | AA | 7 (1.2%) | 5 (5.3%) | ||
| GG | AG | 1 (0.2%) | 0 (0%) | 1.00 | — |
| Logistic regression analysis | |||||
| CD209 −336A>G (genotypes) | 0.36 (0.13–0.99) | ||||
| ICAM3 +443A>G (genotypes) | 1.97 (1.24–3.11) | ||||
| Interaction of CD209 −336A>G and ICAM3 +443A>G | 0.845 | 1.18 (0.22–6.41) |
CI, confidence interval; OR, odds ratio. Note: Only 677 cases were analyzed, as this was the number of cases (with the availability of LDH data) genotyped previously for ICAM3 +443A>G [27].
Boldface values indicate significant results (p < 0.05).
Lower LDH levels: standardized LDH levels on admission that were less than the cutoff value of 1.6.
Higher LDH levels: standardized LDH levels on admission that were more than the cutoff.
χ2 Test, df = 1, unless otherwise indicated.
p Value for overall analysis of combined genotype.
| Combined genotype | No. of cases | Mean LDH level | SEM | ||
|---|---|---|---|---|---|
| ICAM3 +443A>G (Asp143Gly) | CD209 −336A>G | ||||
| AA | AA | 439 | 1.11 | 0.03 | Reference |
| AA | AG | 95 | 1.00 | 0.05 | 0.210 |
| AA | GG | 3 | 0.87 | 0.11 | 0.440 |
| AG | AA | 110 | 1.17 | 0.05 | 0.359 |
| AG | AG | 17 | 1.06 | 0.08 | 0.715 |
| GG | AA | 12 | 1.85 | 0.31 | |
| GG | AG | 1 | 0.91 | — | — |
Mean ± SEM of standardized LDH level of each of the combined genotypes are shown.
Mann-Whitney test. Boldface p value indicates significant finding in the comparison of +443GG/−336AA versus the reference +443AA/−336AA.