Literature DB >> 20352660

Transcription attenuation in bacteria: theme and variations.

Magali Naville1, Danie Gautheret.   

Abstract

Premature termination of transcription, or attenuation, is an efficient RNA-based regulatory strategy that is commonly used in bacterial organisms. Attenuators are generally located in the 50 untranslated regions of genes or operons and combine a Rho-independent terminator, controlling transcription, with an RNA element that senses specific environmental signals. A striking diversity of sensing elements enable regulation of gene expression in response to multiple environmental conditions, including temperature changes, availability of small metabolites(such as ions, amino acids, nucleobases or vitamins), or availability of macromolecules such as tRNAs and regulatory proteins. The wide distribution of attenuators suggests an early emergence among bacteria. However, attenuators also display a great mobility and lability, illustrated by a multiplicity of recent horizontal transfers and duplications.For these reasons, attenuation systems are of high interest both from a fundamental evolutionary perspective and for possible biotechnological applications.

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Year:  2010        PMID: 20352660     DOI: 10.1093/bfgp/elq008

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  26 in total

1.  Mg2+-dependent translational speed bump acts to regulate gene transcription.

Authors:  Kelly T Hughes
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-19       Impact factor: 11.205

Review 2.  Unravelling the means to an end: RNA polymerase II transcription termination.

Authors:  Jason N Kuehner; Erika L Pearson; Claire Moore
Journal:  Nat Rev Mol Cell Biol       Date:  2011-04-13       Impact factor: 94.444

3.  Complementary Tendencies in the Use of Regulatory Elements (Transcription Factors, Sigma Factors, and Riboswitches) in Bacteria and Archaea.

Authors:  Joselyn Chávez; Damien P Devos; Enrique Merino
Journal:  J Bacteriol       Date:  2020-12-18       Impact factor: 3.490

Review 4.  Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation.

Authors:  Sergei Nechaev; Karen Adelman
Journal:  Biochim Biophys Acta       Date:  2010-11-13

Review 5.  Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression.

Authors:  Ruben A T Mars; Pierre Nicolas; Emma L Denham; Jan Maarten van Dijl
Journal:  Microbiol Mol Biol Rev       Date:  2016-10-26       Impact factor: 11.056

Review 6.  Probing RNA structure in vivo.

Authors:  David Mitchell; Sarah M Assmann; Philip C Bevilacqua
Journal:  Curr Opin Struct Biol       Date:  2019-09-13       Impact factor: 6.809

Review 7.  ABC-F translation factors: from antibiotic resistance to immune response.

Authors:  Corentin R Fostier; Laura Monlezun; Farès Ousalem; Shikha Singh; John F Hunt; Grégory Boël
Journal:  FEBS Lett       Date:  2020-12-04       Impact factor: 4.124

8.  Elucidating the Regulatory Elements for Transcription Termination and Posttranscriptional Processing in the Streptomyces clavuligerus Genome.

Authors:  Soonkyu Hwang; Namil Lee; Donghui Choe; Yongjae Lee; Woori Kim; Yujin Jeong; Suhyung Cho; Bernhard O Palsson; Byung-Kwan Cho
Journal:  mSystems       Date:  2021-05-04       Impact factor: 6.496

9.  RNIE: genome-wide prediction of bacterial intrinsic terminators.

Authors:  Paul P Gardner; Lars Barquist; Alex Bateman; Eric P Nawrocki; Zasha Weinberg
Journal:  Nucleic Acids Res       Date:  2011-04-07       Impact factor: 16.971

10.  Transcriptional and posttranscriptional regulation of Bacillus sp. CDB3 arsenic-resistance operon ars1.

Authors:  Xuefei Yu; Wei Zheng; Somanath Bhat; J Andrew Aquilina; Ren Zhang
Journal:  PeerJ       Date:  2015-09-03       Impact factor: 2.984

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