Literature DB >> 20351905

Detecting Underspecification in SNOMED CT concept definitions through natural language processing.

Edson Pacheco1, Holger Stenzhorn, Percy Nohama, Jan Paetzold, Stefan Schulz.   

Abstract

Quality assurance and audit issues play a major role in maintening large biomedical terminology, such as SNOMED CT. Several automatized techniques have been proposed to facilitate the identification of weak spots and suggest adequate improvements.In this study, we address a well-known issue within SNOMED CT: Albeit the wording of many free-text concept descriptions suggests a connection to other concepts, they are often not referred to in the logical concept definition.To detect such inconsistencies, we use a semantic indexing approach which maps free text onto a sequence of semantic identifiers. Applied to SNOMED CT concepts without attributes, our technique spots refinable concepts and suggests appropriate attributes, i.e., connections to other concepts. Based on a manual analysis of random samples, we estimate that approximately 18,000 refinable concepts can be found.

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Mesh:

Year:  2009        PMID: 20351905      PMCID: PMC2815431     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  12 in total

1.  Ontology-based error detection in SNOMED-CT.

Authors:  Werner Ceusters; Barry Smith; Anand Kumar; Christoffel Dhaen
Journal:  Stud Health Technol Inform       Date:  2004

2.  Text retrieval based on medical subwords.

Authors:  Martin Honeck; Udo Hahn; Rüdiger Klar; Stefan Schulz
Journal:  Stud Health Technol Inform       Date:  2002

3.  MorphoSaurus--design and evaluation of an interlingua-based, cross-language document retrieval engine for the medical domain.

Authors:  K Markó; S Schulz; U Hahn
Journal:  Methods Inf Med       Date:  2005       Impact factor: 2.176

4.  Structural methodologies for auditing SNOMED.

Authors:  Yue Wang; Michael Halper; Hua Min; Yehoshua Perl; Yan Chen; Kent A Spackman
Journal:  J Biomed Inform       Date:  2006-12-24       Impact factor: 6.317

5.  Large-scale evaluation of a medical cross-language information retrieval system.

Authors:  Kornél Markó; Philipp Daumke; Stefan Schulz; Rüdiger Klar; Udo Hahn
Journal:  Stud Health Technol Inform       Date:  2007

6.  Auditing description-logic-based medical terminological systems by detecting equivalent concept definitions.

Authors:  Ronald Cornet; Ameen Abu-Hanna
Journal:  Int J Med Inform       Date:  2007-08-10       Impact factor: 4.046

7.  Auditing the semantic completeness of SNOMED CT using formal concept analysis.

Authors:  Guoqian Jiang; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2008-10-24       Impact factor: 4.497

8.  Complexity measures to track the evolution of a SNOMED hierarchy.

Authors:  Duo Wei; Yue Wang; Yehoshua Perl; Junchuan Xu; Michael Halper; Kent A Spackman; Kent Spackman
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

9.  Part-whole reasoning in medical ontologies revisited--introducing SEP triplets into classification-based description logics.

Authors:  S Schulz; M Romacker; U Hahn
Journal:  Proc AMIA Symp       Date:  1998

10.  A "lexically-suggested logical closure" metric for medical terminology maturity.

Authors:  K E Campbell; M S Tuttle; K A Spackman
Journal:  Proc AMIA Symp       Date:  1998
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  4 in total

1.  Dissimilarities in the Logical Modeling of Apparently Similar Concepts in SNOMED CT.

Authors:  Ankur Agrawal; Gai Elhanan; Michael Halper
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

Review 2.  Auditing complex concepts of SNOMED using a refined hierarchical abstraction network.

Authors:  Yue Wang; Michael Halper; Duo Wei; Huanying Gu; Yehoshua Perl; Junchuan Xu; Gai Elhanan; Yan Chen; Kent A Spackman; James T Case; George Hripcsak
Journal:  J Biomed Inform       Date:  2011-09-01       Impact factor: 6.317

3.  Structural Patterns under X-Rays: Is SNOMED CT Growing Straight?

Authors:  Pablo López-García; Stefan Schulz
Journal:  PLoS One       Date:  2016-11-03       Impact factor: 3.240

4.  Qualitative analysis of manual annotations of clinical text with SNOMED CT.

Authors:  Jose Antonio Miñarro-Giménez; Catalina Martínez-Costa; Daniel Karlsson; Stefan Schulz; Kirstine Rosenbeck Gøeg
Journal:  PLoS One       Date:  2018-12-27       Impact factor: 3.240

  4 in total

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