Literature DB >> 20351833

Predication-based semantic indexing: permutations as a means to encode predications in semantic space.

Trevor Cohen1, Roger W Schvaneveldt, Thomas C Rindflesch.   

Abstract

Corpus-derived distributional models of semantic distance between terms have proved useful in a number of applications. For both theoretical and practical reasons, it is desirable to extend these models to encode discrete concepts and the ways in which they are related to one another. In this paper, we present a novel vector space model that encodes semantic predications derived from MEDLINE by the SemRep system into a compact spatial representation. The associations captured by this method are of a different and complementary nature to those derived by traditional vector space models, and the encoding of predication types presents new possibilities for knowledge discovery and information retrieval.

Mesh:

Year:  2009        PMID: 20351833      PMCID: PMC2815384     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  10 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text.

Authors:  Thomas C Rindflesch; Marcelo Fiszman
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

3.  The Unified Medical Language System (UMLS): integrating biomedical terminology.

Authors:  Olivier Bodenreider
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  UMLS language and vocabulary tools.

Authors:  Allen C Browne; Guy Divita; Alan R Aronson; Alexa T McCray
Journal:  AMIA Annu Symp Proc       Date:  2003

5.  Representing word meaning and order information in a composite holographic lexicon.

Authors:  Michael N Jones; Douglas J K Mewhort
Journal:  Psychol Rev       Date:  2007-01       Impact factor: 8.934

6.  Extracting semantic predications from Medline citations for pharmacogenomics.

Authors:  Caroline B Ahlers; Marcelo Fiszman; Dina Demner-Fushman; François-Michel Lang; Thomas C Rindflesch
Journal:  Pac Symp Biocomput       Date:  2007

Review 7.  Empirical distributional semantics: methods and biomedical applications.

Authors:  Trevor Cohen; Dominic Widdows
Journal:  J Biomed Inform       Date:  2009-02-14       Impact factor: 6.317

8.  Exploring MEDLINE space with random indexing and pathfinder networks.

Authors:  Trevor Cohen
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

9.  Reflective Random Indexing and indirect inference: a scalable method for discovery of implicit connections.

Authors:  Trevor Cohen; Roger Schvaneveldt; Dominic Widdows
Journal:  J Biomed Inform       Date:  2009-09-15       Impact factor: 6.317

10.  Mepolizumab and exacerbations of refractory eosinophilic asthma.

Authors:  Pranabashis Haldar; Christopher E Brightling; Beverley Hargadon; Sumit Gupta; William Monteiro; Ana Sousa; Richard P Marshall; Peter Bradding; Ruth H Green; Andrew J Wardlaw; Ian D Pavord
Journal:  N Engl J Med       Date:  2009-03-05       Impact factor: 91.245

  10 in total
  13 in total

1.  Reasoning with Vectors: A Continuous Model for Fast Robust Inference.

Authors:  Dominic Widdows; Trevor Cohen
Journal:  Log J IGPL       Date:  2014-11-19       Impact factor: 0.861

2.  Classification-by-Analogy: Using Vector Representations of Implicit Relationships to Identify Plausibly Causal Drug/Side-effect Relationships.

Authors:  Justin Mower; Devika Subramanian; Ning Shang; Trevor Cohen
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

3.  Embedding of semantic predications.

Authors:  Trevor Cohen; Dominic Widdows
Journal:  J Biomed Inform       Date:  2017-03-08       Impact factor: 6.317

4.  Learning predictive models of drug side-effect relationships from distributed representations of literature-derived semantic predications.

Authors:  Justin Mower; Devika Subramanian; Trevor Cohen
Journal:  J Am Med Inform Assoc       Date:  2018-10-01       Impact factor: 4.497

5.  Exploring Novel Computable Knowledge in Structured Drug Product Labels.

Authors:  Scott A Malec; Richard D Boyce
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2020-05-30

6.  Rapamycin - mTOR + BRAF = ? Using relational similarity to find therapeutically relevant drug-gene relationships in unstructured text.

Authors:  Safa Fathiamini; Amber M Johnson; Jia Zeng; Vijaykumar Holla; Nora S Sanchez; Funda Meric-Bernstam; Elmer V Bernstam; Trevor Cohen
Journal:  J Biomed Inform       Date:  2019-01-04       Impact factor: 6.317

7.  Discovering discovery patterns with Predication-based Semantic Indexing.

Authors:  Trevor Cohen; Dominic Widdows; Roger W Schvaneveldt; Peter Davies; Thomas C Rindflesch
Journal:  J Biomed Inform       Date:  2012-07-26       Impact factor: 6.317

8.  EpiphaNet: An Interactive Tool to Support Biomedical Discoveries.

Authors:  Trevor Cohen; G Kerr Whitfield; Roger W Schvaneveldt; Kavitha Mukund; Thomas Rindflesch
Journal:  J Biomed Discov Collab       Date:  2010-09-21

9.  Using computable knowledge mined from the literature to elucidate confounders for EHR-based pharmacovigilance.

Authors:  Scott A Malec; Peng Wei; Elmer V Bernstam; Richard D Boyce; Trevor Cohen
Journal:  J Biomed Inform       Date:  2021-03-11       Impact factor: 6.317

10.  Predicting high-throughput screening results with scalable literature-based discovery methods.

Authors:  T Cohen; D Widdows; C Stephan; R Zinner; J Kim; T Rindflesch; P Davies
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2014-10-08
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