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Literature DB >> 20348266

Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium.

Roland J Siezen¹, Jumamurat Bayjanov, Bernadet Renckens, Michiel Wels, Sacha A F T van Hijum, Douwe Molenaar, Johan E T van Hylckama Vlieg.

Abstract

Lactococcus lactis is a lactic acid bacterium used in the production of many fermented dairy products. We report the complete genome sequence of L. lactis subsp. lactis KF147, a nondairy strain isolated from mung bean sprouts. The circular chromosome of 2,598,144 bp, the largest among the sequenced lactococcal strains, encodes many properties related to adaptation to the plant environment.

Entities: Chemical Species

Mesh：

Year: 2010 PMID： 20348266 PMCID： PMC2863553 DOI： 10.1128/JB.00276-10

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

9 in total

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Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

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Journal: Int J Food Microbiol Date: 1998-12-08 Impact factor: 5.277

3. Comparative genomics of the lactic acid bacteria.

Authors: K Makarova; A Slesarev; Y Wolf; A Sorokin; B Mirkin; E Koonin; A Pavlov; N Pavlova; V Karamychev; N Polouchine; V Shakhova; I Grigoriev; Y Lou; D Rohksar; S Lucas; K Huang; D M Goodstein; T Hawkins; V Plengvidhya; D Welker; J Hughes; Y Goh; A Benson; K Baldwin; J-H Lee; I Díaz-Muñiz; B Dosti; V Smeianov; W Wechter; R Barabote; G Lorca; E Altermann; R Barrangou; B Ganesan; Y Xie; H Rawsthorne; D Tamir; C Parker; F Breidt; J Broadbent; R Hutkins; D O'Sullivan; J Steele; G Unlu; M Saier; T Klaenhammer; P Richardson; S Kozyavkin; B Weimer; D Mills
Journal: Proc Natl Acad Sci U S A Date: 2006-10-09 Impact factor: 11.205

4. Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363.

Authors: Udo Wegmann; Mary O'Connell-Motherway; Aldert Zomer; Girbe Buist; Claire Shearman; Carlos Canchaya; Marco Ventura; Alexander Goesmann; Michael J Gasson; Oscar P Kuipers; Douwe van Sinderen; Jan Kok
Journal: J Bacteriol Date: 2007-02-16 Impact factor: 3.490

5. The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403.

Authors: A Bolotin; P Wincker; S Mauger; O Jaillon; K Malarme; J Weissenbach; S D Ehrlich; A Sorokin
Journal: Genome Res Date: 2001-05 Impact factor: 9.043

6. Genome-scale genotype-phenotype matching of two Lactococcus lactis isolates from plants identifies mechanisms of adaptation to the plant niche.

Authors: Roland J Siezen; Marjo J C Starrenburg; Jos Boekhorst; Bernadet Renckens; Douwe Molenaar; Johan E T van Hylckama Vlieg
Journal: Appl Environ Microbiol Date: 2007-11-26 Impact factor: 4.792

7. Pfam: clans, web tools and services.

Authors: Robert D Finn; Jaina Mistry; Benjamin Schuster-Böckler; Sam Griffiths-Jones; Volker Hollich; Timo Lassmann; Simon Moxon; Mhairi Marshall; Ajay Khanna; Richard Durbin; Sean R Eddy; Erik L L Sonnhammer; Alex Bateman
Journal: Nucleic Acids Res Date: 2006-01-01 Impact factor: 16.971

8. InterProScan: protein domains identifier.

Authors: E Quevillon; V Silventoinen; S Pillai; N Harte; N Mulder; R Apweiler; R Lopez
Journal: Nucleic Acids Res Date: 2005-07-01 Impact factor: 16.971

9. The Pfam protein families database.

Authors: Alex Bateman; Lachlan Coin; Richard Durbin; Robert D Finn; Volker Hollich; Sam Griffiths-Jones; Ajay Khanna; Mhairi Marshall; Simon Moxon; Erik L L Sonnhammer; David J Studholme; Corin Yeats; Sean R Eddy
Journal: Nucleic Acids Res Date: 2004-01-01 Impact factor: 16.971

9 in total

54 in total

1. Unleashing Natural Competence in Lactococcus lactis by Induction of the Competence Regulator ComX.

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Journal: Appl Environ Microbiol Date: 2017-09-29 Impact factor: 4.792

2. A specific mutation in the promoter region of the silent cel cluster accounts for the appearance of lactose-utilizing Lactococcus lactis MG1363.

Authors: Ana Solopova; Herwig Bachmann; Bas Teusink; Jan Kok; Ana Rute Neves; Oscar P Kuipers
Journal: Appl Environ Microbiol Date: 2012-06-01 Impact factor: 4.792

3. Assessment of the diversity of dairy Lactococcus lactis subsp. lactis isolates by an integrated approach combining phenotypic, genomic, and transcriptomic analyses.

Authors: Punthip Tan-a-ram; Tamara Cardoso; Marie-Line Daveran-Mingot; Sunthorn Kanchanatawee; Pascal Loubière; Laurence Girbal; Muriel Cocaign-Bousquet
Journal: Appl Environ Microbiol Date: 2010-12-03 Impact factor: 4.792

4. A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation.

Authors: Jingwei Jiang; Jun Li; Hoi Shan Kwan; Chun Hang Au; Patrick Tik Wan Law; Lei Li; Kai Man Kam; Julia Mei Lun Ling; Frederick C Leung
Journal: BMC Res Notes Date: 2012-01-31

5. Multifactorial diversity sustains microbial community stability.

Authors: Oylum Erkus; Victor C L de Jager; Maciej Spus; Ingrid J van Alen-Boerrigter; Irma M H van Rijswijck; Lucie Hazelwood; Patrick W M Janssen; Sacha A F T van Hijum; Michiel Kleerebezem; Eddy J Smid
Journal: ISME J Date: 2013-07-04 Impact factor: 10.302

6. The Genome of the Plant-Associated Lactic Acid Bacterium Lactococcus lactis KF147 Harbors a Hybrid NRPS-PKS System Conserved in Strains of the Dental Cariogenic Streptococcus mutans.

Authors: Barzan I Khayatt; Vera van Noort; Roland J Siezen
Journal: Curr Microbiol Date: 2019-11-08 Impact factor: 2.188

7. Genome-wide transcriptional responses to carbon starvation in nongrowing Lactococcus lactis.

Authors: Onur Ercan; Michiel Wels; Eddy J Smid; Michiel Kleerebezem
Journal: Appl Environ Microbiol Date: 2015-01-30 Impact factor: 4.792

8. Molecular and metabolic adaptations of Lactococcus lactis at near-zero growth rates.

Authors: Onur Ercan; Michiel Wels; Eddy J Smid; Michiel Kleerebezem
Journal: Appl Environ Microbiol Date: 2014-10-24 Impact factor: 4.792

9. Lactococcus lactis Diversity in Undefined Mixed Dairy Starter Cultures as Revealed by Comparative Genome Analyses and Targeted Amplicon Sequencing of epsD.

Authors: Cyril A Frantzen; Hans Petter Kleppen; Helge Holo
Journal: Appl Environ Microbiol Date: 2018-01-17 Impact factor: 4.792

10. Chromosomal diversity in Lactococcus lactis and the origin of dairy starter cultures.

Authors: William J Kelly; Lawrence J H Ward; Sinead C Leahy
Journal: Genome Biol Evol Date: 2010-09-16 Impact factor: 3.416