Literature DB >> 20345344

Contributions of computational chemistry and biophysical techniques to fragment-based drug discovery.

Rafael Gozalbes1, Rodrigo J Carbajo, Antonio Pineda-Lucena.   

Abstract

In the last decade, fragment-based drug discovery (FBDD) has evolved from a novel approach in the search of new hits to a valuable alternative to the high-throughput screening (HTS) campaigns of many pharmaceutical companies. The increasing relevance of FBDD in the drug discovery universe has been concomitant with an implementation of the biophysical techniques used for the detection of weak inhibitors, e.g. NMR, X-ray crystallography or surface plasmon resonance (SPR). At the same time, computational approaches have also been progressively incorporated into the FBDD process and nowadays several computational tools are available. These stretch from the filtering of huge chemical databases in order to build fragment-focused libraries comprising compounds with adequate physicochemical properties, to more evolved models based on different in silico methods such as docking, pharmacophore modelling, QSAR and virtual screening. In this paper we will review the parallel evolution and complementarities of biophysical techniques and computational methods, providing some representative examples of drug discovery success stories by using FBDD.

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Year:  2010        PMID: 20345344     DOI: 10.2174/092986710791111224

Source DB:  PubMed          Journal:  Curr Med Chem        ISSN: 0929-8673            Impact factor:   4.530


  6 in total

1.  Fragment Pose Prediction Using Non-equilibrium Candidate Monte Carlo and Molecular Dynamics Simulations.

Authors:  Nathan M Lim; Meghan Osato; Gregory L Warren; David L Mobley
Journal:  J Chem Theory Comput       Date:  2020-03-27       Impact factor: 6.006

Review 2.  Evolutions in fragment-based drug design: the deconstruction-reconstruction approach.

Authors:  Haijun Chen; Xiaobin Zhou; Ailan Wang; Yunquan Zheng; Yu Gao; Jia Zhou
Journal:  Drug Discov Today       Date:  2014-09-27       Impact factor: 7.851

3.  Site Identification by Ligand Competitive Saturation (SILCS) simulations for fragment-based drug design.

Authors:  Christina E Faller; E Prabhu Raman; Alexander D MacKerell; Olgun Guvench
Journal:  Methods Mol Biol       Date:  2015

Review 4.  Matching the power of high throughput screening to the chemical diversity of natural products.

Authors:  Curtis J Henrich; John A Beutler
Journal:  Nat Prod Rep       Date:  2013-08-08       Impact factor: 13.423

5.  Predictivity approach for quantitative structure-property models. Application for blood-brain barrier permeation of diverse drug-like compounds.

Authors:  Sorana D Bolboacă; Lorentz Jäntschi
Journal:  Int J Mol Sci       Date:  2011-07-05       Impact factor: 5.923

6.  A novel inhibitor of Mammalian triosephosphate isomerase found by an in silico approach.

Authors:  Lorraine Marsh; Kaushal Shah
Journal:  Int J Med Chem       Date:  2014-03-23
  6 in total

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