Literature DB >> 20337411

Structural insight into the role of thrombospondin-1 binding to calreticulin in calreticulin-induced focal adhesion disassembly.

Qi Yan1, Joanne E Murphy-Ullrich, Yuhua Song.   

Abstract

Thrombospondin-1 (TSP1) binding to calreticulin (CRT) on the cell surface stimulates association of CRT with LDL receptor-related protein (LRP1) to signal focal adhesion disassembly and engagement of cellular activities. The structural basis for this phenomenon is unknown. We studied the binding thermodynamics of the TSP1-CRT complex and the conformational changes in CRT induced by binding to TSP1 with combined binding free energy analysis, molecular dynamics simulation, and anisotropic network model restrained molecular dynamics simulation. Results showed that mutations of Lys 24 and Lys 32 in TSP1 to Ala and of amino acids 24-26 and 32-34 in CRT to Ala significantly weakened the binding of TSP1 and CRT, which is consistent with experimental results. Upon validation of the calculated binding affinity changes of the TSP1-CRT complex by mutations in key residues in TSP1 and CRT with the experimental results, we performed conformational analyses to understand the role of TSP1 binding to CRT in the induction of conformational changes in CRT. Conformational analyses showed that TSP1 binding to CRT resulted in a more "open" conformation and a significant rotational change for the CRT N-domain with respect to the CRT P-domain, which could expose the potential binding site(s) in CRT for binding to LRP1 to signal focal adhesion disassembly. Results offer structural insight into the role of TSP1 binding to CRT in CRT-induced focal adhesion disassembly.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20337411      PMCID: PMC2943676          DOI: 10.1021/bi902067f

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  60 in total

1.  Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations.

Authors:  Jeffrey J Gray; Stewart Moughon; Chu Wang; Ora Schueler-Furman; Brian Kuhlman; Carol A Rohl; David Baker
Journal:  J Mol Biol       Date:  2003-08-01       Impact factor: 5.469

2.  Structural dynamics of nucleosome core particle: comparison with nucleosomes containing histone variants.

Authors:  Amutha Ramaswamy; Ivet Bahar; Ilya Ioshikhes
Journal:  Proteins       Date:  2005-02-15

3.  Molecular basis of inhibitory peptide maurotoxin recognizing Kv1.2 channel explored by ZDOCK and molecular dynamic simulations.

Authors:  Hong Yi; Su Qiu; Zhijian Cao; Yingliang Wu; Wenxin Li
Journal:  Proteins       Date:  2008-02-15

Review 4.  The cell biology of thrombospondin-1.

Authors:  H Chen; M E Herndon; J Lawler
Journal:  Matrix Biol       Date:  2000-12       Impact factor: 11.583

5.  Thrombospondin mediates focal adhesion disassembly through interactions with cell surface calreticulin.

Authors:  S Goicoechea; A W Orr; M A Pallero; P Eggleton; J E Murphy-Ullrich
Journal:  J Biol Chem       Date:  2000-11-17       Impact factor: 5.157

6.  Molecular mechanism of the sea anemone toxin ShK recognizing the Kv1.3 channel explored by docking and molecular dynamic simulations.

Authors:  Ling Jin; Yingliang Wu
Journal:  J Chem Inf Model       Date:  2007-08-25       Impact factor: 4.956

7.  The anti-adhesive activity of thrombospondin is mediated by the N-terminal domain of cell surface calreticulin.

Authors:  Silvia Goicoechea; Manuel Antonio Pallero; Paul Eggleton; Marek Michalak; Joanne E Murphy-Ullrich
Journal:  J Biol Chem       Date:  2002-07-29       Impact factor: 5.157

8.  A combination of rescoring and refinement significantly improves protein docking performance.

Authors:  Brian Pierce; Zhiping Weng
Journal:  Proteins       Date:  2008-07

9.  Expression of thrombospondins by endothelial cells. Injury is correlated with TSP-1.

Authors:  M J Reed; L Iruela-Arispe; E R O'Brien; T Truong; T LaBell; P Bornstein; E H Sage
Journal:  Am J Pathol       Date:  1995-10       Impact factor: 4.307

10.  Thrombospondin signaling through the calreticulin/LDL receptor-related protein co-complex stimulates random and directed cell migration.

Authors:  A Wayne Orr; Carrie A Elzie; Dennis F Kucik; Joanne E Murphy-Ullrich
Journal:  J Cell Sci       Date:  2003-07-15       Impact factor: 5.285

View more
  25 in total

1.  The calreticulin-binding sequence of thrombospondin 1 regulates collagen expression and organization during tissue remodeling.

Authors:  Mariya T Sweetwyne; Manuel A Pallero; Ailing Lu; Lauren Van Duyn Graham; Joanne E Murphy-Ullrich
Journal:  Am J Pathol       Date:  2010-08-19       Impact factor: 4.307

Review 2.  The role of the endoplasmic reticulum protein calreticulin in mediating TGF-β-stimulated extracellular matrix production in fibrotic disease.

Authors:  Benjamin Y Owusu; Kurt A Zimmerman; Joanne E Murphy-Ullrich
Journal:  J Cell Commun Signal       Date:  2017-10-28       Impact factor: 5.782

3.  Dissecting physical structure of calreticulin, an intrinsically disordered Ca2+-buffering chaperone from endoplasmic reticulum.

Authors:  Anna Rita Migliaccio; Vladimir N Uversky
Journal:  J Biomol Struct Dyn       Date:  2017-05-26

4.  Identification of motions in membrane proteins by elastic network models and their experimental validation.

Authors:  Basak Isin; Kalyan C Tirupula; Zoltán N Oltvai; Judith Klein-Seetharaman; Ivet Bahar
Journal:  Methods Mol Biol       Date:  2012

Review 5.  Thrombospondin1 in tissue repair and fibrosis: TGF-β-dependent and independent mechanisms.

Authors:  Mariya T Sweetwyne; Joanne E Murphy-Ullrich
Journal:  Matrix Biol       Date:  2012-01-14       Impact factor: 11.583

6.  Activation mechanisms of αVβ3 integrin by binding to fibronectin: A computational study.

Authors:  Lingyun Wang; Di Pan; Qi Yan; Yuhua Song
Journal:  Protein Sci       Date:  2017-04-07       Impact factor: 6.725

7.  Association of calreticulin expression with disease activity and organ damage in systemic lupus erythematosus patients.

Authors:  Yichao Wang; Jiaogui Xie; Zhili Liu; Hongwei Fu; Qianyu Huo; Yajun Gu; Yunde Liu
Journal:  Exp Ther Med       Date:  2017-03-20       Impact factor: 2.447

8.  Structural insight for the roles of fas death domain binding to FADD and oligomerization degree of the Fas-FADD complex in the death-inducing signaling complex formation: a computational study.

Authors:  Qi Yan; Jay M McDonald; Tong Zhou; Yuhua Song
Journal:  Proteins       Date:  2012-11-05

9.  Structural Insight for Roles of DR5 Death Domain Mutations on Oligomerization of DR5 Death Domain-FADD Complex in the Death-Inducing Signaling Complex Formation: A Computational Study.

Authors:  Hongyi Yang; Yuhua Song
Journal:  J Mol Model       Date:  2016-03-19       Impact factor: 1.810

10.  Glycan-dependent and -independent interactions contribute to cellular substrate recruitment by calreticulin.

Authors:  Sanjeeva J Wijeyesakere; Syed M Rizvi; Malini Raghavan
Journal:  J Biol Chem       Date:  2013-10-07       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.