Literature DB >> 20336248

Structure of the gas-phase glycine tripeptide.

Dimitrios Toroz1, Tanja van Mourik.   

Abstract

The structural preferences of the neutral gas-phase glycine tripeptide have been investigated using a variety of strategies including a hierarchy of electronic structure theory (encompassing HF/3-21G single-point energy calculation and geometry optimisation, B3LYP/6-31G(d) geometry optimisation and MP2/6-31+G(d) single-point energy calculation and/or geometry optimisation). The structures and relative stabilities of the 20 most stable conformers identified were verified by M05-2X and mPW2-PLYP-D calculations. The most stable conformer located has a folded gamma-turn structure, with an NH...N interaction between the N-terminal nitrogen and the amide hydrogen of glycine (2) and an NH...O interaction between the amide hydrogen of glycine (3) and the carboxyl oxygen of glycine (1). The results show a clear preference for folded over extended structures.

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Year:  2010        PMID: 20336248     DOI: 10.1039/b921897a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  4 in total

1.  A comparison of the behavior of functional/basis set combinations for hydrogen-bonding in the water dimer with emphasis on basis set superposition error.

Authors:  Joshua A Plumley; J J Dannenberg
Journal:  J Comput Chem       Date:  2011-02-15       Impact factor: 3.376

2.  Peptide bond distortions from planarity: new insights from quantum mechanical calculations and peptide/protein crystal structures.

Authors:  Roberto Improta; Luigi Vitagliano; Luciana Esposito
Journal:  PLoS One       Date:  2011-09-16       Impact factor: 3.240

3.  Unfavorable regions in the ramachandran plot: Is it really steric hindrance? The interacting quantum atoms perspective.

Authors:  Peter I Maxwell; Paul L A Popelier
Journal:  J Comput Chem       Date:  2017-08-25       Impact factor: 3.376

4.  Accurate structure, thermodynamic and spectroscopic parameters from CC and CC/DFT schemes: the challenge of the conformational equilibrium in glycine.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Cristina Puzzarini
Journal:  Phys Chem Chem Phys       Date:  2013-04-19       Impact factor: 3.676

  4 in total

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