| Literature DB >> 20331906 |
Maznah Ismail1, Ghanya Al-Naqeeb, Wan Abd Aziz Bin Mamat, Zalinah Ahmad.
Abstract
BACKGROUND: Gamma-oryzanol (OR), a phytosteryl ferulate mixture extracted from rice bran oil, has a wide spectrum of biological activities in particular, it has antioxidant properties.Entities:
Year: 2010 PMID: 20331906 PMCID: PMC2859356 DOI: 10.1186/1743-7075-7-23
Source DB: PubMed Journal: Nutr Metab (Lond) ISSN: 1743-7075 Impact factor: 4.169
Gene name, gene locus and gene product used in GeXP multiplex analysis of antioxidant and oxidative stress related genes in rat liver
| Gene Name | Gene Locus | Gene Product/Description | Function |
|---|---|---|---|
| Ubb | NM_138895 | Ubiquitin B | Mediates ATP-dependent degradation (stress response-related gene) |
| 18S a | BC168964 | 18S | Housekeeping genes |
| Nfkbib | NM_030867 | Nuclear factor of kappa light polypeptide | Stress response-related gene |
| Akr1b1 | NM_012498 | Aldo-keto reductase family 1, member B1 | Stress response-related gene |
| Grm5 | NM_017012 | Glutamate receptor, metabotropic5 | Stress response-related gene |
| Apo E | NM_138828 | Apolipoprotein E | Lipid metabolism(stress response-related gene) |
| Stip1 | NM_138911 | Stress-induced phosphoprotein 1 | Stress response-related gene |
| Cox11 | NM_001109575 | COX11 homolog, cytochrome c oxidase | Oxidation |
| (Mt1a) | NM_138826 | Metallothionein 1a | Stress response-related gene |
| Oxsr1 | NM_001108194 | Oxidative-stress responsive 1 | Stress response-related gene |
| GPX | NM_183403 | Glutathione peroxidase 2 | Antioxidant |
| Gapdhs a | NM_023964 | Glyceraldehyde-3-phosphate dehydrogenase | Housekeeping genes |
| SOD1 | NM_017050 | Superoxide dismutase 1, | Antioxidant |
| Hao1 | NM_001107780 | Hydroxyacid oxidase 1, liver | Stress response-related gene |
| NADH | NM_001130505 | NADH dehydrogenase | Nuclear gene encoding mitochondrial protein (stress response-related gene) |
| Actb a | NM_031144 | actin, beta | Housekeeping genes |
| CAT | NM_012520 | catalase | Antioxidant |
| Knar b | Internal control | ||
a Gene used for normalization
b Internal control
Gene name, gene product size, and forward and reverse primer sequences used in GeXP assays of antioxidant and oxidative stress related genes in rat liver
| Gene Name | Fragment Size | Left Sequence w/Universals | Right Sequence w/Universals |
|---|---|---|---|
| Ubb | 187 | AGGTGACACTATAGAATAGACACCATCGAGAACGTGAA | GTACGACTCACTATAGGGAGACAAGGTGCAGGGTTGACT |
| 18S a | 194 | AGGTGACACTATAGAATAGCTCCAGGACGGAGTTCATA | GTACGACTCACTATAGGGACAGCAGGTGGAGCTCTGATT |
| Nfkbib | 204 | AGGTGACACTATAGAATACCCGAGGATGAGGATGATAA | GTACGACTCACTATAGGGATCATCAGGAAGAGGTTTGGC |
| Akr1b1 | 210 | AGGTGACACTATAGAATACGCAGAAGTCTGAAGCTGTG | GTACGACTCACTATAGGGACTGGTACTGCCCTCCACATT |
| Grm5 | 213 | AGGTGACACTATAGAATAGCCAACTTTAATGAGGCCAA | GTACGACTCACTATAGGGATGATGTACACCTTCGGGACA |
| Apo E | 230 | AGGTGACACTATAGAATAGAAGATGAAGGCTCTGTGGG | GTACGACTCACTATAGGGACTCTGCAGCTCTTCCTGGAC |
| Stip1 | 236 | AGGTGACACTATAGAATAACTACAACAAATGCCGGGAG | GTACGACTCACTATAGGGATGGCACTTCTTGAGCACATC |
| Cox11 | 244 | AGGTGACACTATAGAATACTTCCTTCCCCCATCTGTTT | GTACGACTCACTATAGGGACTGTTCCTCACAATGGCTCA |
| (Mt1a) | 250 | AGGTGACACTATAGAATACACCAGATCTCGGAATGGAC | GTACGACTCACTATAGGGAACTGTTCGTCACTTCAGGCA |
| Oxsr1 | 257 | AGGTGACACTATAGAATACAGCGATTGAACTAGCCACA | GTACGACTCACTATAGGGATTGTGCCTCAACAGTTCTGC |
| GPX | 271 | AGGTGACACTATAGAATATCAACATCGAGCCTGACATC | GTACGACTCACTATAGGGACAGACTTAGAGCCCCCAGTG |
| Gapdh a | 279 | AGGTGACACTATAGAATAATCAATGGATTTGGACGCAT | GTACGACTCACTATAGGGAAGCTCCAGGGGATTTCCTTA |
| SOD1 | 285 | AGGTGACACTATAGAATACTTGCTTTTTGCTCTCCCAG | GTACGACTCACTATAGGGAAAAATGAGGTCCTGCAGTGG |
| Hao1 | 293 | AGGTGACACTATAGAATACCTGTCAGACCATGGGAACT | GTACGACTCACTATAGGGATGAGCTGTGGTGGTAGCTTG |
| NADH | 298 | AGGTGACACTATAGAATAGTGAAGCCCATTTTCAGTCG | GTACGACTCACTATAGGGATAATGTGTGTCCGCTGCTTC |
| Actb a | 307 | AGGTGACACTATAGAATAATGTACGTAGCCATCCAGGC | GTACGACTCACTATAGGGAAGGGCAACATAGCACAGCTT |
| Cat | 314 | AGGTGACACTATAGAATAGTGGTTTTCACCGACGAGAT | GTACGACTCACTATAGGGACACGAGGTCCCAGTTACCAT |
| Knar b | 325 | AGGTGACACTATAGAATAATCATCAGCATTGCATTCGATTCCTGTTTG | GTACGACTCACTATAGGGAATTCCGACTCGTCCAACATC |
a Gene used for normalization
b Internal control
Figure 1A representative electropherogram from the GeXP multiplex analysis in NC group.
Figure 2A representative electropherogram from the GeXP multiplex analysis PC group.
Figure 3A representative electropherogram from the GeXP multiplex analysis of gamma-oryzanol rich fraction at 125 mg/kg (ORFL) treated group.
Figure 4A representative electropherogram from the GeXP multiplex analysis of gamma-oryzanol rich fraction at 250 mg/kg (ORFM) treated group.
Figure 5A representative electropherogram from the GeXP multiplex analysis of gamma-oryzanol rich fraction at 500 mg/kg (ORFH) treated group.
Figure 6A representative electropherogram from the GeXP multiplex analysis of gamma-oryzanol at 100 mg/kg (OR) treated group.
Figure 7Relative expression of 14 antioxidants and oxidative stress related genes in stressed and untreated rats (PC) and unstressed untreated rats (NC). Each value represents mean of 3 rats ± SD. Data was normalized with 18S gene. Within each gene Different alphabets indicate significant difference (P < 0.05).
Figure 8Relative suppression of 14 antioxidants and oxidative stress related genes treated with OR and ORF. NC = unstressed and untreated rats, PC = stressed and untreated rats OR = group treated with gamma-oryzanol at 100 mg/kg, ORFL = group treated with gamma-oryzanol rich fraction at 125 mg/kg, ORFM = group treated with gamma-oryzanol rich fraction at 250 mg/kg, ORFH = group treated with gamma-oryzanol rich fraction at 500 mg/kg. Each value represents means of 3 rats ± SD. Within each gene different alphabets indicate significant difference (P < 0.05).
Figure 9Relative expression of 14 antioxidants and oxidative stress related genes by OR and ORF treatment. NC = unstressed and untreated rats, PC = stressed and untreated rats OR = group treated with gamma-oryzanol at 100 mg/kg, ORFL = group treated with gamma-oryzanol rich fraction at 125 mg/kg, ORFM = group treated with gamma-oryzanol rich fraction at 250 mg/kg, ORFH = group treated with gamma-oryzanol rich fraction at 500 mg/kg. Each value represents means of 3 rats ± SD. Within each gene different alphabets indicate significant difference (P < 0.05).