Literature DB >> 20299197

Chromatin as a potential carrier of heritable information.

Paul D Kaufman1, Oliver J Rando.   

Abstract

Organisms with the same genome can inherit information in addition to that encoded in the DNA sequence-this is known as epigenetic inheritance. Epigenetic inheritance is responsible for many of the phenotypic differences between different cell types in multicellular organisms. Work by many investigators over the past decades has suggested that a great deal of epigenetic information might be carried in the pattern of post-translational modifications of the histone proteins, although this is not as well established as many believe. For example, it is unclear whether and how the histones, which are displaced from the chromosome during passage of the replication fork and are often exchanged from the DNA template at other times, carry information from one cellular generation to the next. Here, we briefly review the evidence that some chromatin states are indeed heritable, and then focus on the mechanistic challenges that remain in order to understand how this inheritance can be achieved. Copyright 2010. Published by Elsevier Ltd.

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Year:  2010        PMID: 20299197      PMCID: PMC3022377          DOI: 10.1016/j.ceb.2010.02.002

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  74 in total

Review 1.  Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins.

Authors:  Leonie Ringrose; Renato Paro
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

Review 2.  Split decision: what happens to nucleosomes during DNA replication?

Authors:  Anthony T Annunziato
Journal:  J Biol Chem       Date:  2005-01-21       Impact factor: 5.157

3.  Replication-independent core histone dynamics at transcriptionally active loci in vivo.

Authors:  Christophe Thiriet; Jeffrey J Hayes
Journal:  Genes Dev       Date:  2005-03-15       Impact factor: 11.361

4.  Assembly of the SIR complex and its regulation by O-acetyl-ADP-ribose, a product of NAD-dependent histone deacetylation.

Authors:  Gunn-Guang Liou; Jason C Tanny; Ryan G Kruger; Thomas Walz; Danesh Moazed
Journal:  Cell       Date:  2005-05-20       Impact factor: 41.582

5.  A yeast catabolic enzyme controls transcriptional memory.

Authors:  Ioannis Zacharioudakis; Thomas Gligoris; Dimitris Tzamarias
Journal:  Curr Biol       Date:  2007-11-08       Impact factor: 10.834

6.  Epigenetic chromatin silencing: bistability and front propagation.

Authors:  Mohammad Sedighi; Anirvan M Sengupta
Journal:  Phys Biol       Date:  2007-11-07       Impact factor: 2.583

7.  A model for transmission of the H3K27me3 epigenetic mark.

Authors:  Klaus H Hansen; Adrian P Bracken; Diego Pasini; Nikolaj Dietrich; Simmi S Gehani; Astrid Monrad; Juri Rappsilber; Mads Lerdrup; Kristian Helin
Journal:  Nat Cell Biol       Date:  2008-10-19       Impact factor: 28.824

8.  Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites.

Authors:  Lucio H Freitas-Junior; Rosaura Hernandez-Rivas; Stuart A Ralph; Dvorak Montiel-Condado; Omar K Ruvalcaba-Salazar; Ana Paola Rojas-Meza; Liliana Mâncio-Silva; Ricardo J Leal-Silvestre; Alisson Marques Gontijo; Spencer Shorte; Artur Scherf
Journal:  Cell       Date:  2005-04-08       Impact factor: 41.582

9.  Regulation of replication fork progression through histone supply and demand.

Authors:  Anja Groth; Armelle Corpet; Adam J L Cook; Daniele Roche; Jiri Bartek; Jiri Lukas; Geneviève Almouzni
Journal:  Science       Date:  2007-12-21       Impact factor: 47.728

10.  H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state.

Authors:  Donna Garvey Brickner; Ivelisse Cajigas; Yvonne Fondufe-Mittendorf; Sara Ahmed; Pei-Chih Lee; Jonathan Widom; Jason H Brickner
Journal:  PLoS Biol       Date:  2007-04       Impact factor: 8.029

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  42 in total

1.  Information recovery in molecular biology: causal modelling of regulated promoter switching experiments.

Authors:  Robert S Anderssen; Christopher A Helliwell
Journal:  J Math Biol       Date:  2012-04-28       Impact factor: 2.259

2.  Corepressor protein CDYL functions as a molecular bridge between polycomb repressor complex 2 and repressive chromatin mark trimethylated histone lysine 27.

Authors:  Yu Zhang; Xiaohan Yang; Bin Gui; Guojia Xie; Di Zhang; Yongfeng Shang; Jing Liang
Journal:  J Biol Chem       Date:  2011-10-17       Impact factor: 5.157

3.  Sir3 and epigenetic inheritance of silent chromatin in Saccharomyces cerevisiae.

Authors:  Tina Motwani; Minakshi Poddar; Scott G Holmes
Journal:  Mol Cell Biol       Date:  2012-05-14       Impact factor: 4.272

4.  Progressive methylation of ageing histones by Dot1 functions as a timer.

Authors:  Dirk De Vos; Floor Frederiks; Marit Terweij; Tibor van Welsem; Kitty F Verzijlbergen; Ekaterina Iachina; Erik L de Graaf; A F Maarten Altelaar; Gideon Oudgenoeg; Albert J R Heck; Jeroen Krijgsveld; Barbara M Bakker; Fred van Leeuwen
Journal:  EMBO Rep       Date:  2011-09-01       Impact factor: 8.807

Review 5.  Chromatin: constructing the big picture.

Authors:  Bas van Steensel
Journal:  EMBO J       Date:  2011-04-28       Impact factor: 11.598

6.  SNF2 Family Protein Fft3 Suppresses Nucleosome Turnover to Promote Epigenetic Inheritance and Proper Replication.

Authors:  Nitika Taneja; Martin Zofall; Vanivilasini Balachandran; Gobi Thillainadesan; Tomoyasu Sugiyama; David Wheeler; Ming Zhou; Shiv I S Grewal
Journal:  Mol Cell       Date:  2017-03-16       Impact factor: 17.970

7.  Multivalent di-nucleosome recognition enables the Rpd3S histone deacetylase complex to tolerate decreased H3K36 methylation levels.

Authors:  Jae-Wan Huh; Jun Wu; Chul-Hwan Lee; Miyong Yun; Daniel Gilada; Chad A Brautigam; Bing Li
Journal:  EMBO J       Date:  2012-08-03       Impact factor: 11.598

Review 8.  Regulation of histone methylation by noncoding RNAs.

Authors:  Richard I Joh; Christina M Palmieri; Ian T Hill; Mo Motamedi
Journal:  Biochim Biophys Acta       Date:  2014-06-17

9.  RYBP/YAF2-PRC1 complexes and histone H1-dependent chromatin compaction mediate propagation of H2AK119ub1 during cell division.

Authors:  Jicheng Zhao; Min Wang; Luyuan Chang; Juan Yu; Aoqun Song; Cuifang Liu; Wenjun Huang; Tiantian Zhang; Xudong Wu; Xiaohua Shen; Bing Zhu; Guohong Li
Journal:  Nat Cell Biol       Date:  2020-03-23       Impact factor: 28.824

10.  A bridging model for persistence of a polycomb group protein complex through DNA replication in vitro.

Authors:  Stanley M Lo; Nicole E Follmer; Bettina M Lengsfeld; Egbert V Madamba; Samuel Seong; Daniel J Grau; Nicole J Francis
Journal:  Mol Cell       Date:  2012-06-29       Impact factor: 17.970

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