Literature DB >> 2029516

Contributions of residue 45(CD3) and heme-6-propionate to the biomolecular and geminate recombination reactions of myoglobin.

T E Carver1, J S Olson, S J Smerdon, S Krzywda, A J Wilkinson, Q H Gibson, R S Blackmore, J D Ropp, S G Sligar.   

Abstract

Overall association and dissociation rate constants were measured at 20 degrees C for O2, CO, and alkyl isocyanide binding to position 45 (CD3) mutants of pig and sperm whale myoglobins and to sperm whale myoglobin reconstituted with protoheme IX dimethyl ester. In pig myoglobin, Lys45(CD3) was replaced with Arg, His, Ser, and Glu; in sperm whale myoglobin, Arg45(CD3) was replaced with Ser and Gly. Intramolecular rebinding of NO, O2, and methyl isocyanide to Arg45, Ser45, Glu45, and Lys45(native) pig myoglobins was measured following 35-ps and 17-ns excitation pulses. The shorter, picosecond laser flash was used to examine ligand recombination from photochemically produced contact pairs, and the longer, nanosecond flash was used to measure the rebinding of ligands farther removed from the iron atom. Mutations at position 45 or esterification of the heme did not change significantly (less than or equal to 2-fold) the overall association rate constants for NO, CO, and O2 binding at room temperature. These data demonstrate unequivocally that Lys(Arg)45 makes little contribution to the outer kinetic barrier for the entry of diatomic gases into the distal pocket of myoglobin, a result that contradicts a variety of previous structural and theoretical interpretations. However, the rates of geminate recombination of NO and O2 and the affinity of myoglobin for O2 were dependent upon the basicity of residue 45. The series of substitutions Arg45, Lys45, Ser45, and Glu45 in pig myoglobin led to a 3-fold decrease in the initial rate for the intramolecular, picosecond rebinding of NO and 4-fold decrease in the geminate rate constant for the nanosecond rebinding of O2. (ABSTRACT TRUNCATED AT 250 WORDS)

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Year:  1991        PMID: 2029516     DOI: 10.1021/bi00233a009

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

1.  The stretching frequencies of bound alkyl isocyanides indicate two distinct ligand orientations within the distal pocket of myoglobin.

Authors:  George C Blouin; John S Olson
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

2.  Alkyl isocyanides serve as transition state analogues for ligand entry and exit in myoglobin.

Authors:  George C Blouin; Rachel L Schweers; John S Olson
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

3.  Ligand binding to heme proteins. V. Light-induced relaxation in proximal mutants L89I and H97F of carbonmonoxymyoglobin.

Authors:  Y Abadan; E Y Chien; K Chu; C D Eng; G U Nienhaus; S G Sligar
Journal:  Biophys J       Date:  1995-06       Impact factor: 4.033

4.  Straight-chain alkyl isocyanides open the distal histidine gate in crystal structures of myoglobin .

Authors:  Robert D Smith; George C Blouin; Kenneth A Johnson; George N Phillips; John S Olson
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

5.  New light on NO bonding in Fe(III) heme proteins from resonance Raman spectroscopy and DFT modeling.

Authors:  Alexandra V Soldatova; Mohammed Ibrahim; John S Olson; Roman S Czernuszewicz; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2010-04-07       Impact factor: 15.419

6.  Perturbations of the distal heme pocket in human myoglobin mutants probed by infrared spectroscopy of bound CO: correlation with ligand binding kinetics.

Authors:  S Balasubramanian; D G Lambright; S G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-15       Impact factor: 11.205

7.  Sulfide-binding hemoglobins: Effects of mutations on active-site flexibility.

Authors:  S Fernandez-Alberti; D E Bacelo; R C Binning; J Echave; M Chergui; J Lopez-Garriga
Journal:  Biophys J       Date:  2006-06-16       Impact factor: 4.033

8.  Palmitate interaction with physiological states of myoglobin.

Authors:  Lifan Shih; Youngran Chung; Renuka Sriram; Thomas Jue
Journal:  Biochim Biophys Acta       Date:  2014-01

9.  Application of molecular dynamics and free energy perturbation methods to metalloporphyrin-ligand systems II: CO and dioxygen binding to myoglobin.

Authors:  M A Lopez; P A Kollman
Journal:  Protein Sci       Date:  1993-11       Impact factor: 6.725

10.  Detailed NMR analysis of the heme-protein interactions in component IV Glycera dibranchiata monomeric hemoglobin-CO.

Authors:  S L Alam; B F Volkman; J L Markley; J D Satterlee
Journal:  J Biomol NMR       Date:  1998-02       Impact factor: 2.835

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